Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3376 |
Symbol | |
ID | 5609954 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4112226 |
End bp | 4113443 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934314 |
Product | phosphopentomutase |
Protein accession | YP_001475108 |
Protein GI | 157376508 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1015] Phosphopentomutase |
TIGRFAM ID | [TIGR01696] phosphopentomutase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.301348 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0494326 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGTA CATTTATTAT GATGTTGGAC TCATTTGGTA TCGGAGCGGC GGCAGATGCT GAAGCGTTCG GTGATACCGG GTCTGATACC TTTGGCAATA TCGCAAAAGC GTGTGCCGAA GGAAAAGCAA ACGAAGGTCG TGAAGGCCCG TTGAAGCTAC CTAATCTTGC ACGTCTGGGC CTTGCCCAAG CATCGAAAGA GAGCACGGGC CAGCTTCCAG CCGGTTTCAG TGACGATGTT GAGATCATTG GCGCCTATGG CCATGCCGAT GAACTCAGTA CCGGTAAAGA TACGCCTAGT GGACACTGGG AGTTAGCGGG TGTACCTGTT CTGTATGAAT GGGGATACTT CAGCGACCAT ACCAACTCTT TCCCGAAAGA GCTGACTGAT AAAATTCTAG CCAGAGCCGG CTTGTCAGAT TACTTAGGTA ACTGCCATGC ATCGGGTACT GCGATTTTGG AAGAGCTCGG TAACGAGCAT ATGACCAGTG GCTTGCCAAT TTTTTACACT TCGGCAGACT CTGTATTCCA GGTGGCGTGT CACGAAGAGA CTTTCGGACT AGAGAATCTT TATACTTTGT GTCAGATCGT TCGTGAAGAG CTTGAGCCAT ATAACATTGG TCGCGTAATT GCCCGTCCTT TCGTTGGCAC GGGTCCTAGC GACTTTGCTC GTACGGGTAA CAGACGCGAT TACGCGGTTG AGCCGCCAGC AAAGACGGTA CTCGATAAAC TTAAAGATTC CGGTGGTGAA GTGGTGAGTG TCGGTAAGAT TGCCGACATC TATGCACACT GCGGTATCAC TAAGAAAATC AAAGCATCTG GCCTCGAAGC ATTGTTTGAT GCAACGCTCG AAGAGCTGAA AGTCGCAGGT GATAACACGA TAGTGTTTAC TAACTTCGTT GACTTCGATT CTCACTTCGG TCACAGACGT GATGTTGCCG GTTACGCGAG AAGCCTCGAG TATTTCGATT CTCGCCTGCC TGAACTGATG GCGCTGATGG GCGAAGACGA CCTATTACTG CTAACTGCAG ACCATGGTTG TGATCCGACT TGGCCAGGAA CTGACCATAC TCGTGAACGT GTGCCAGTAT TGGCATACGG AGCAGGACTA GAAGCTGGCT CATTAGGCCG CCGTAAGAGT TTTGCCGACA TGGGTCAATC CATAGCAAGT TACTTTAAAC TTGAGCCTAT GGAATATGGC GAGTCGTTTA TTAAGTAA
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Protein sequence | MKRTFIMMLD SFGIGAAADA EAFGDTGSDT FGNIAKACAE GKANEGREGP LKLPNLARLG LAQASKESTG QLPAGFSDDV EIIGAYGHAD ELSTGKDTPS GHWELAGVPV LYEWGYFSDH TNSFPKELTD KILARAGLSD YLGNCHASGT AILEELGNEH MTSGLPIFYT SADSVFQVAC HEETFGLENL YTLCQIVREE LEPYNIGRVI ARPFVGTGPS DFARTGNRRD YAVEPPAKTV LDKLKDSGGE VVSVGKIADI YAHCGITKKI KASGLEALFD ATLEELKVAG DNTIVFTNFV DFDSHFGHRR DVAGYARSLE YFDSRLPELM ALMGEDDLLL LTADHGCDPT WPGTDHTRER VPVLAYGAGL EAGSLGRRKS FADMGQSIAS YFKLEPMEYG ESFIK
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