| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3373 |
|---|
| Symbol | |
|---|
| ID | 5609593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4109371 |
|---|
| End bp | 4110363 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640934311 |
|---|
| Product | phosphoserine phosphatase |
|---|
| Protein accession | YP_001475105 |
|---|
| Protein GI | 157376505 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR00338] phosphoserine phosphatase SerB
[TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.381097 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGTC TGAGCCACAC TTCACTGTTT TCATGGTTAA TTAATGAAGA GACAGCCAGT
TATCAATTTC ATGGCCAGGC TCTGTCACGC CATGTCGAGT GCCAGGCTCC ACAAGGAGGA
GCCAGACTTA GACTCATCTA TGCAATGCGA GATGTTGAGG CTGAGATAGC GAGGGCGATT
TCTCAGTCGA CCTTACCCTT CAGTTTAGCG TTCATCGACA GAAAGAGCGG GCTTAACTGC
ATCGAACTAT GCAGTGATGA GCCACTTACC CAGACACATC TGCAGTTGTT CTCCTCCCTT
GAGAAGGTTG AAGCTTTTTC AATGGCTGCA GAGCCGCCGA CCCTCAATAG CCCGGGTTTA
TTGGTGATGG ATATGGACTC GACCGCTATC GAGATTGAAT GTATCGATGA GCTGGCAGCC
ATGGCTGGGG TCGGCGAAGC CGTTGCCGAA GTCACAGAGC GGGCGATGCT GGGGGAGCTC
GACTTTGAGG AGAGCTTGAG GGGCAGAGTA TCTCAGCTAA CCGGGGCCGA TGAATCAATT
ATTCAAACCT TGTGCGATAA ACTGCCTTTA ATGCCCGGGT TAACCGAGAT GGTGAGCGAG
CTGCAGTCTC ATGACTGGCG TGTGGTTGTC GCCTCGGGTG GTTTTACCCC CTTTGTCGGG
CACCTTAAGG AGTTATTAAA CCTCGATGCC GCCTATGCTA ATAAGCTGGA TATCGAGGGG
GGGAAGCTGG TCGGCACCGT TTCCGGACAA GTGGTCGATG CGCAGTTTAA AGCCGATACC
GTGCAACGAT GCGCGCAGTT GTGGGATATC CCTCAAGGGC AGAGATTAGC CATAGGTGAC
GGTGCTAACG ATATCCCCAT GATAGAGGCG GCAGATTTCG GCATCGCCTA TCATGCTAAG
CCTAAGCTAA AACAGGCTGC CGATGTCTCT ATCAGTCAGC TGGATTTAAG GGTGCTGCCG
TATCTGTTAC TGCTAGACTC AATCTCTTCC TAG
|
|---|
| Protein sequence | MESLSHTSLF SWLINEETAS YQFHGQALSR HVECQAPQGG ARLRLIYAMR DVEAEIARAI
SQSTLPFSLA FIDRKSGLNC IELCSDEPLT QTHLQLFSSL EKVEAFSMAA EPPTLNSPGL
LVMDMDSTAI EIECIDELAA MAGVGEAVAE VTERAMLGEL DFEESLRGRV SQLTGADESI
IQTLCDKLPL MPGLTEMVSE LQSHDWRVVV ASGGFTPFVG HLKELLNLDA AYANKLDIEG
GKLVGTVSGQ VVDAQFKADT VQRCAQLWDI PQGQRLAIGD GANDIPMIEA ADFGIAYHAK
PKLKQAADVS ISQLDLRVLP YLLLLDSISS
|
|---|
| |