Gene Ssed_3338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3338 
Symbol 
ID5609795 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4058895 
End bp4059677 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content45% 
IMG OID640934276 
Productamino acid ABC transporter 
Protein accessionYP_001475070 
Protein GI157376470 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAAACC TCAACCTACT CCCGCGAGCA CTTTCACTAC TATTGTGTCT CATCAGCTAT 
AATCTTGCCG CCGATGACAT GGCTAAGACC ATCAAGTTAG CCGCCGAAGA CAATTGGGCT
CCTTATGCCG AATCCTCCGG AAGCGGACTT TCCCACTCTC TGATCAATTC TGCCTTCTCG
CGTGTTGGCA TCGAAGTCGA CAGCATTGTT GTTCCCTATG CTCGCGCCGT TGTTATGGCC
AAAAAGGGGA TAGTCGACGG TGTTTTTAAC TTAATAAAAG AGAAAAGCAC TCAAGATCAG
TTTATCTTCG GCAAGCAAGC TCTTTTTTCC GCCACTGCAT CATTTTATCA AAACAAGCAG
TCTCCACTTA ACGTGGAAAG CAAATGGCTG CTCCCCAAAA ATACCAGAGT CGGCGTCATT
GATGGCTATG AGTACGGAGA TGAATTATCA GAATTGCCAA ACATACAGGT CATTAAGCTA
TCGAATCACA ACCAACTGAT TAACTTGCTG CTATTAAATA GAATAGATAC TGCGATCATG
TATGATCTGG TTGCCGAACA GTATATAGCA CGGATGCGGG TTTCATCTGA GATCGGTTCG
ACATTCATAA ACCATACCGG GCAAGTTTAT CTCGCATTCT CCAAGAAGAA CCCCGAGGCA
GAACACTTAG CTGAGATGCT GGACACAGGA TTAACAGCCC TAAAACATGA TGGCAGTTAC
CAGCAAATTA TGACTTCCAG CCTCGAAACG GCTCATCATT CGAATGGGAA GTTAAAGCCT
TAG
 
Protein sequence
MPNLNLLPRA LSLLLCLISY NLAADDMAKT IKLAAEDNWA PYAESSGSGL SHSLINSAFS 
RVGIEVDSIV VPYARAVVMA KKGIVDGVFN LIKEKSTQDQ FIFGKQALFS ATASFYQNKQ
SPLNVESKWL LPKNTRVGVI DGYEYGDELS ELPNIQVIKL SNHNQLINLL LLNRIDTAIM
YDLVAEQYIA RMRVSSEIGS TFINHTGQVY LAFSKKNPEA EHLAEMLDTG LTALKHDGSY
QQIMTSSLET AHHSNGKLKP