| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3331 |
|---|
| Symbol | ppnK |
|---|
| ID | 5610278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4047710 |
|---|
| End bp | 4048633 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640934269 |
|---|
| Product | inorganic polyphosphate/ATP-NAD kinase |
|---|
| Protein accession | YP_001475063 |
|---|
| Protein GI | 157376463 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0061] Predicted sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000815034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGATCA CATTCAAGGT TTCAAGCCCT AGCACTAAGA TAAATATGCC TAAAACGTTT
CAATCTATTG GCCTGATTGG CAAGCCTAAC CACCACGGCA CAAACCTGAC CCTAAAACGT
TTGCATCACT GGTTAACGAT GCAAGGTTTC GACATCCTGG TAGAGGAGAG AGTCGCTGCC
GATATCGGAC CTCAGGCTGT GTCAGTCGAT CTACTCGAGA TAGGCGATAG ATGCGATCTC
GCCATCGTCG TTGGCGGTGA TGGCAATATG CTGGGTGCGG CGCGAGTGTT AGCCAGGTTT
GATATCGGTG TCATTGGTGT CAACCGTGGC AATCTGGGAT TTCTGACCGA CCTGCCCCCC
GACTCATTCG AAGCCGAACT AGGAAAGGTG CTCGATGGAC AATTCGAGAC CGAACACCGG
TTTCTGCTCG AAGCCGAGGT GCATCGCCAC GGCCATATGA AAGCGAGCAA CACAGCCGTG
AATGAAGCCG TGCTCCACCC GGGAAAAGTG GCTCACATGA TCGAATTTGA GGTCTATATC
GATGACGACT TCATGTATAG CCAACGCGCC GACGGCATGA TTGTGTCGAC CCCTACAGGC
TCTACCGCCT ATTCACTGTC GGCTGGAGGA GCGATTCTGA CACCGAACCT TGAAGCGCTA
ATCCTGGTCC CTATGTTTCC TCATACCCTC TCCTGTCGCC CAATCGTGGT CGATGCCTGT
AGCACCATAA AACTGGTGGT ATCACCGGAT AACGGTGATA ACCTGGAGGT GAGTTGTGAT
GGTCATGTCA CCTTAGCGGT ACTGCCGGGG GATGAAATTA TCATAAAAAG AAGCCATGAG
CGCCTCAGAC TTATTCACCC TAAAGGGCAT AACTATTTCC ACGTATTAAG AAGTAAGCTC
GGCTGGGGAA GTAAACTGTT TTAA
|
|---|
| Protein sequence | MGITFKVSSP STKINMPKTF QSIGLIGKPN HHGTNLTLKR LHHWLTMQGF DILVEERVAA
DIGPQAVSVD LLEIGDRCDL AIVVGGDGNM LGAARVLARF DIGVIGVNRG NLGFLTDLPP
DSFEAELGKV LDGQFETEHR FLLEAEVHRH GHMKASNTAV NEAVLHPGKV AHMIEFEVYI
DDDFMYSQRA DGMIVSTPTG STAYSLSAGG AILTPNLEAL ILVPMFPHTL SCRPIVVDAC
STIKLVVSPD NGDNLEVSCD GHVTLAVLPG DEIIIKRSHE RLRLIHPKGH NYFHVLRSKL
GWGSKLF
|
|---|
| |