Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3330 |
Symbol | |
ID | 5610277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4047032 |
End bp | 4047661 |
Gene Length | 630 bp |
Protein Length | 209 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934268 |
Product | heat shock protein GrpE |
Protein accession | YP_001475062 |
Protein GI | 157376462 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0576] Molecular chaperone GrpE (heat shock protein) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000166428 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAACG ATTCGAGTAA AGCGAAACAG AACCAAGTAG ATGAAGCTGT TGAGGGTGAA ATCATCACAG ATAATGAAAA TGAAACTGTT ACAGGTGAAG CCAGTTTGAT GGATGAACTT ACTCAGGCAA ACTTTCGTGT TGAAGAGCTT GAGCAGGCAT TAGAAGCCGC GACAGCCAAA GTTGATGAGC AAAAAGATTC TGTTATCAGA GCCGCTGCCG AGGTTGATAA TATTCGTCGT CGTGCCGCTA TCGATGTTGA GAAAGCCCGT AAATTTGCCC TTGAAAAGTT TGCTAATGAA CTTCTGCCGG TGATTGACAA TATGGAGCGC GCGCTTCAGG GAACCGATGC TGAAGCTGAG GCGACTAAAG CTGTCTATGA AGGTGTGGAG TTAACACTGA AGAGCTTTAT TGGTACGGTT GAAAAGTTTG GATTGACAGT GGTTAACCCT CAGGGGGAAA CCTTTAATCC AGAGCATCAT CAGGCTATCG GTATGCAACC AAGCCCGGAT TTTCCTGCTA ACACAGTCAT GATGGTTATG CAGAAAGGCT ACATCCTTAA CGAGCGTCTA TTACGACCGG CTATGGTCAT GGTGTCTCAA GGCGGAGCCG CTGTAGATAC ACAGGCTTAA
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Protein sequence | MSNDSSKAKQ NQVDEAVEGE IITDNENETV TGEASLMDEL TQANFRVEEL EQALEAATAK VDEQKDSVIR AAAEVDNIRR RAAIDVEKAR KFALEKFANE LLPVIDNMER ALQGTDAEAE ATKAVYEGVE LTLKSFIGTV EKFGLTVVNP QGETFNPEHH QAIGMQPSPD FPANTVMMVM QKGYILNERL LRPAMVMVSQ GGAAVDTQA
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