Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3322 |
Symbol | |
ID | 5610561 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4038502 |
End bp | 4039413 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934260 |
Product | DNA-binding transcriptional activator GcvA |
Protein accession | YP_001475054 |
Protein GI | 157376454 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000222387 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCTAGAC GTTTACCGCC ATTAAATGCA GTGAAAGCAT TCGAAGCAGC TGCGAGGCAT CTAAGCTTTA CCCGGGCAGC CGAAGAGCTC TTCGTAACTC AGGCTGCGGT GAGTCATCAA ATAAAGGCTT TAGAAGAGTA TTTAGGCCTG AAATTATTCC GTCGAAAGAA CCGCTCTCTG CTATTAACTG AAGAGGGGCA GGGGTACTTT TTAGATATCA AAGACATCTT TGTTCAGTTG GCCGATGCAA CAGACCGACT TCTTGCCAGA AGTGCCATAG GTTCACTGAC AGTCAGCACT TCACCCAGTT TTGCTATTCA ATGGTTAGTG CCTCGTTTGG CCAAATTCAG TGAGAATAAC CCCGATATCG ATGTTCGAAT TAAGGCCGTC GATAATGAAG ATAGCTCGTT GACTGATGAT GTCGATGTTG CCATCTATTA CGGACAGGGG AGTTGGGCCG GATTAAGAGC CGATAAGTTA AAAAATGAGG TGTTAATTCC CGTTTGTTCG CCCATGTTAC TCAATGGTCC CAAACCACTG GAGAAACCCA GTGATCTTAA AAATCATACG CTTTTACATG ATATGAGTCG CCATGATTGG CAGGCGTGGT TTAGGCAATG TGGGATTAAT GATATTAATG TGAATCAGGG GCCCATATTT AGTCATTCTT CATTAGTCCT GCAAGCGGCG GCTCATGGAC AAGGTGTTGC GCTGGGTTAT AGCGTACTTG CCAGGCCCGA TATTAAGGCG GGCAGACTGG TTTGCCCCTT TCAGGAGGTA TTGGTGAGTA AGAATGCTTA CTACTTGGTT TGTCAGCAAA ATCATGCAGA TATAGGTAAG GTTGCGGCCT TCAGAGAGTG GATGCTAGAT ATGTTTGAAG AGGAGTCTCG CAGTGAGCTA CTTCCTGGTT AA
|
Protein sequence | MSRRLPPLNA VKAFEAAARH LSFTRAAEEL FVTQAAVSHQ IKALEEYLGL KLFRRKNRSL LLTEEGQGYF LDIKDIFVQL ADATDRLLAR SAIGSLTVST SPSFAIQWLV PRLAKFSENN PDIDVRIKAV DNEDSSLTDD VDVAIYYGQG SWAGLRADKL KNEVLIPVCS PMLLNGPKPL EKPSDLKNHT LLHDMSRHDW QAWFRQCGIN DINVNQGPIF SHSSLVLQAA AHGQGVALGY SVLARPDIKA GRLVCPFQEV LVSKNAYYLV CQQNHADIGK VAAFREWMLD MFEEESRSEL LPG
|
| |