| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3304 |
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| Symbol | |
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| ID | 5614014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4017411 |
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| End bp | 4018355 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934242 |
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| Product | porin |
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| Protein accession | YP_001475036 |
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| Protein GI | 157376436 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000871207 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000130468 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGAACG TTTTCTGTAA AACTTTACTG GCATCTGCTC TTGCTACTGC AACTCTGGCT
TCTGCACATG CTGCTGAGCC GCTCACTGTA TACGGTAAGT TGAACGTAAC GGCTCAGTCT
AATGATGTCG GTGGTGATGC TACAACAACG ATTCAGAGTA ATGCCTCTCG CTTCGGCGCA
AAGGGGACAT TTGAATTGAG TAACTCTTTG GAAGCTTTTT ACACTATCGA GTATGAAGTC
GATACCGGTG ATGATACGAA AGAGAACTTC AAGGCACGTA ATCAATTCGT GGGCCTTAAA
GGCAGCTTTG GTGCCGTGTC TGTGGGTCGT AACGACACTA TGTTAAAGCA ATCACAGGGT
AAGATAGATC AATTCAACGA CCTTTCCGGT GATTTGAAAA ACCTGTTTAA GGGTGAGAAC
CGTCTGGCTC AGACGGCCAC TTATATCACT CCCTCTTTCA GTGGATTTAA GCTTGGTGTC
ACCTACGCAG CCGAAGGCGA TAGCGACCAG CAAGGCCAGG ATGGTTTCAG TGTTGCGGCC
ATGTATGGTG ATTCCAAGTT AAAGAAGTCT CCTGTCTATG CATCGATTGC CTATGACTCA
GATGTCAAAG GCTACGAAAT TGTTCGTGCA AGTGTACAGG GCAAAATTGC AGGCCTTAAA
ATTGGTGGTA TGTACCAGCA GCAGGAGAAG ACCTTCGACG ATGGTCAAGC CGTATCTAAC
GACAGTGATA CAGGTTACCT CTTGAGTGCG GCGTATAAGA TCGATGCGGT AGTCTTGAAG
GCTCAGTATC AGGATATGGA AAACAAGGGC GATTCCTGGT CTGTTGGCGG TGATTACAAG
TTAGGAAAGC CGACTAAGCT GTTTGCCTTC TACTCGAACC GTGCCTTTGA GGGCGATGAG
AATGATGATA AATTCTTCGG CCTGGGTCTG GAACACAAGT TCTAA
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| Protein sequence | MMNVFCKTLL ASALATATLA SAHAAEPLTV YGKLNVTAQS NDVGGDATTT IQSNASRFGA
KGTFELSNSL EAFYTIEYEV DTGDDTKENF KARNQFVGLK GSFGAVSVGR NDTMLKQSQG
KIDQFNDLSG DLKNLFKGEN RLAQTATYIT PSFSGFKLGV TYAAEGDSDQ QGQDGFSVAA
MYGDSKLKKS PVYASIAYDS DVKGYEIVRA SVQGKIAGLK IGGMYQQQEK TFDDGQAVSN
DSDTGYLLSA AYKIDAVVLK AQYQDMENKG DSWSVGGDYK LGKPTKLFAF YSNRAFEGDE
NDDKFFGLGL EHKF
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