| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3302 |
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| Symbol | |
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| ID | 5610414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4015060 |
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| End bp | 4016379 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934240 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001475034 |
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| Protein GI | 157376434 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR02966] phosphate regulon sensor kinase PhoR |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000529502 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000230896 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTTTGATT CATATTCAGG TTACCGACTG CTTTCCCGGT TAATAACCTA CCTGTTGTTA
TGTTTTATTC TGGGTCTCAT TGTAGGCCAG GTGGTTTGGG TTCTCCTTAT CGGCGCTATC
GCGCTACTTT TTTGGCATTA TCGTCAACTC TCCCGACTCA ACTTTTGGCT ATGGCGTGAC
AGGCGTTTAA CTCCTCCCAA CGGCAGTGGC AGCTGGGAGG GTGTATTCAA TGGTATCTAC
CGCCTTCAGG GTAAGAACAG GAAAAGAGTG TCTCAACTAG CCTTTCTGCT TGGTCAGTTC
AGGCAGGGGG CGGAGGCACT GCCTGATGCG GCGGTGGTGC TCGACTCTGA ACACAATATT
ATCTGGTGTA ATAAACTCGC TCAGCTGCTG CTTGGTTTTG TCTGGCCGTT AGACCGTGGT
CAACGTATCG ATAACCTTTT GCGTCACCCG GATTTTGCTA ACTACTTGAA GAAAGCGGAA
TATCAAGAGC CACTGGAACT CGCATCTCCC CATGCCGAAG GTCGTGTCCT TGAGATTAGG
GTGATGGGAT ATGGTTCGGG GCAGTTTTTG TTGATCGCCA GAGATATCAC CAGAGTAAGA
CAGCTCGAGG GGATGCGAAA AGACTTTGTC GCTAATGTTT CCCATGAACT CAAGACCCCA
CTCACGGTGT TGCAAGGTTA CCTTGAGATG ATGCAGGGAA TGGCTGAGCC CGGCTCTCCT
AACATTAAAG CCGTGGAGCA GATGCAGCAG CAGACGAATA GAATGCGCTC TATGGTAGAG
CAGTTACTGG TGCTATCCAG AATCGAAGAT TCGGCGGAAA TAAACCTGGC GCTCACGGTT
AATATGTCCC ACATGATGGA GATATTAAAG GAGGAGGCAA ATGCATTGTC CCAAGGTGAA
TATGAGTTGA GTTTCTATTG TGAACCCGAC CTGCACCTCT ATGGCAATGA ACTCGAGTTA
CGTAGCGCCT GCTCTAATCT TATCTCCAAT GCCATCAGGT ACACAGAGCC TGGAGGTAAA
ATCGATATCA GCTGGAAAAA GGTGGCCACA GGGGGCATTT TCAGTGTTAG TGATAGTGGA
GATGGTATTG CACCACAGCA TATTGGTCGT CTGACCGAAC GTTTTTATCG TGTCGACAGT
GCGCGCACGC GGCAAAGAGG TGGGACAGGG TTGGGCCTCG CGATCACCAA GCATGCCCTC
AGTCACCACC AGAGCGAACT TATGGTTACT AGTGAGCTGG GCAAGGGGAG TACATTCAGT
TTCCTTATCC CGTCTAATCT TATGGAGAGC AAGACTGAAA TCCTGGATGA ACAGCAGTGA
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| Protein sequence | MFDSYSGYRL LSRLITYLLL CFILGLIVGQ VVWVLLIGAI ALLFWHYRQL SRLNFWLWRD
RRLTPPNGSG SWEGVFNGIY RLQGKNRKRV SQLAFLLGQF RQGAEALPDA AVVLDSEHNI
IWCNKLAQLL LGFVWPLDRG QRIDNLLRHP DFANYLKKAE YQEPLELASP HAEGRVLEIR
VMGYGSGQFL LIARDITRVR QLEGMRKDFV ANVSHELKTP LTVLQGYLEM MQGMAEPGSP
NIKAVEQMQQ QTNRMRSMVE QLLVLSRIED SAEINLALTV NMSHMMEILK EEANALSQGE
YELSFYCEPD LHLYGNELEL RSACSNLISN AIRYTEPGGK IDISWKKVAT GGIFSVSDSG
DGIAPQHIGR LTERFYRVDS ARTRQRGGTG LGLAITKHAL SHHQSELMVT SELGKGSTFS
FLIPSNLMES KTEILDEQQ
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