| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3290 |
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| Symbol | |
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| ID | 5610402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3997753 |
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| End bp | 3999579 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934228 |
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| Product | peptidase S8/S53 subtilisin kexin sedolisin |
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| Protein accession | YP_001475022 |
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| Protein GI | 157376422 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1404] Subtilisin-like serine proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000004601 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTAT CTAAAATTGC GGGTGCAATC ATTGCCCTGA CAGTGAGTGT ATCGACAACC
GCAAAAGCAG ATGACGATCG TTATATTATT CAAGTGGACA ATAACAATAA AGGCATCGTT
AAGGCGTTAG CTAACAAGCT TGGTGCTCAA ATACATGTAG ATGGAAATGG TTTTATTTCG
GCAACGTTTG CCGGTAAAGA CCTTTTACAG GTTAAAGGGT TACTGAATAA CCCACACATT
AAACTGGTCG AAGCCGACCA ACGTCGTCAC CTGATGTCTG CCTTCAGTGA TGATGCGGGT
AACCCTATGA CTGAGCAGGT AACGCCTTAT GCGGTTTATC AGTCTCAGGC CGATCAGCTT
ACCTTTAATG CCAATGCCGG TATGAAGGTT TGTATTATCG ATTCGGGTCT GGATAGCAGT
AATGGTGATT TCGAGTGGAA TAACATTAGC GGTGACAATG ACTCGGGTAC GGGGAACTGG
AATGACCATG GTGGCCCACA TGGTACACAC GTTGCGGGTA CCGTAGCTGC GGCAGATAAT
GGTTTTGGAG TTGTAGGTAT GGCGCCGGGC GCCGATCTGC ATATCATCAA GGTATTTAAT
GAAGATGGCT GGGGCTACTC ATCAGATTTA GCTAAAGCTG CCGATCTATG TAGTGCCGCG
GGTGCTAACA TCATCAGCAT GAGTCTTGGT GGTGGTGGTT CAAACTCTAC CGAATCCAAT
GCCTTTCAGG CATTTACCGA TGCGGGTGGC TTGGTCGTGG CCGCTGCCGG TAACGACGGT
AATAACGTAC GTTCATATCC TGCGGGTTAC CCCTCTGTGA TGATGATTGG TGCGAACGAT
GCCGATAATA ATATCGCCGA TTTCTCTCAG TTCCCAACTT GTCTGTCTGG TCGCGGCAAG
CGTGCGAAAG ATGATGAGAC TATCTGTGTC GAAGTGACGG CAGGTGGTGT CGATACCCTA
TCGACGTACC CTGCGGGTAT GGCTACATCG GCAAACATGA CTGCCGATGG TGTGGCTTAC
GCGAGCTCCG CGATGGAAAA CTCTGGTGCT GTTAACGGTA GTACTTACTA CATGGGTACC
GCCGAGGCGA CCGACGGTGG TGCTAACGGT AATATCTGTG TGATCGATCG CGGCGTGATC
TCTTTCCACG ATAAAGTGGC TAACTGTGAA GGTTCCGGCG GCGTTGGTGC GATCATCATC
AACAATGAAG CGGGTATGCT CTATGCCACT TTAGGTGACA CCAATACTAC AAGTATCCCG
GCTGTTGGCG CTGCCTTCGA AGATCGAGCG GCGTTGTTAG CTGCCGGCAG TGCGAATATC
GATATCGGTA CCTCTGACTT TGGTTTCATG AGTGGAACCT CGATGGCGAC ACCTGCGGTT
TCTGGTCTTG CGGCGCTGGT TTGGTCAAAT CATAACGAGT GTACGGGTAC AGAAATTCGT
GAAGCACTTA AAGCGACAGC CATGGACAGC GGCGCTGCGG GTAAAGATGA TTACTTCGGT
TACGGTATCG TCAAGGCGGC TGCAGCCGAT GCTTACCTGA CGGCTAATGG TTGTGCCGGT
AACGGCGGTG GCACAGAACC AGGTGGTGAC TTCACTCTTT CTGCGAGCGG TTATAAGAGC
AAAGGCGTGA AGAAAGTCGA CTTGAGCTTT AGCGGTGCGG CGGGCAGCAA TGTCGATGTG
TATCGTAATG GCAGCATGAT TACTACTACA TCGGCAAGTT CGACTTATAC TGACTCAATC
ACATCTAAGG GCGGCGGTTC ATACACCTAT AAAGCCTGTG ATGAAGGTAC ATCGACCTGT
ACTGGTGAGC AGACGGTTAA CTTTTAA
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| Protein sequence | MKLSKIAGAI IALTVSVSTT AKADDDRYII QVDNNNKGIV KALANKLGAQ IHVDGNGFIS
ATFAGKDLLQ VKGLLNNPHI KLVEADQRRH LMSAFSDDAG NPMTEQVTPY AVYQSQADQL
TFNANAGMKV CIIDSGLDSS NGDFEWNNIS GDNDSGTGNW NDHGGPHGTH VAGTVAAADN
GFGVVGMAPG ADLHIIKVFN EDGWGYSSDL AKAADLCSAA GANIISMSLG GGGSNSTESN
AFQAFTDAGG LVVAAAGNDG NNVRSYPAGY PSVMMIGAND ADNNIADFSQ FPTCLSGRGK
RAKDDETICV EVTAGGVDTL STYPAGMATS ANMTADGVAY ASSAMENSGA VNGSTYYMGT
AEATDGGANG NICVIDRGVI SFHDKVANCE GSGGVGAIII NNEAGMLYAT LGDTNTTSIP
AVGAAFEDRA ALLAAGSANI DIGTSDFGFM SGTSMATPAV SGLAALVWSN HNECTGTEIR
EALKATAMDS GAAGKDDYFG YGIVKAAAAD AYLTANGCAG NGGGTEPGGD FTLSASGYKS
KGVKKVDLSF SGAAGSNVDV YRNGSMITTT SASSTYTDSI TSKGGGSYTY KACDEGTSTC
TGEQTVNF
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