| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3242 |
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| Symbol | |
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| ID | 5614030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3934779 |
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| End bp | 3937214 |
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| Gene Length | 2436 bp |
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| Protein Length | 811 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934180 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001474974 |
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| Protein GI | 157376374 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000414671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAAT TTCGTTTTTC ACTACTTGCC GTTGCTTGTG CTTCAACATT TTTACCTATG
ACGCTTCACG CTGCACAGGC CGAAGGGCTG GAAAACACGG ACGTAGAACG TATCACCGTC
TATGGAAGAC AAAATCAGGT AGTTATGAAT TCAGGGCTGG CCACAAAGTC AGATATGTCT
TTGATGGAAA CGCCAGCGGC GGTTGTTATC GTCGATGAAG AATTGATTAA CGCTCAGGGC
GTCAACAGCC TGCAAGATTT AGTGCGTAAC ATCAGTGGCG TGACTCAGGC GGGTAATAAC
TATGGTATCG GAGATAATCT GGTTATCCGT GGTTTGGGCG CAAACTATAC CTATGATGGT
ATGTATGGCG GTGCGGGCTT GGGTAACACC TTTAACCCTA CACGGTCACT CACCAATGTC
GAGTCGGTCG AGGTGCTTAA GGGACCTGCA ACCGGGCTTT ATGGCATGGG CAGCGCCGGT
GGTGTGATCA ACCTGATTGA GAAGAAGCCG CAGTTTGAGT CTAAAAACGA ATTTGGTGTT
GAGGTCGGTC AGTGGGATAC CTACTCGTTA AGCTTGGATA GCACGGGTGG TTTAAGCGAT
AAACTGGCTT ATCGCGTCGT GGCTAAAACG GCACGTAGCG ACGGCTACCG TGATATCGGC
ACCGACAGGG ATGAGGTGTA CAGCTCACTT AAATATGTGT TTGACGATTC TCAAGACCTG
ATGTTGTCGG CATCCTATAT CAATGACTCC ATTGCCGTTG ACTCTATCGG TCACCCTATC
CGCATTTATA ATGCCGACTC AGTCGGTGGT AAAAACGCCG GCGAGGCAAG CTGGGAAGAC
TTGATTAATG ACCCTGAGGG TAAAGGCATC CAGCTGAGTG ATGAGCAGCG CCAACAGTTA
GCCGACTCAT TAGCCAATAG TGATGGCCTG ACGCCTTATG AGTTTGGTCA TGCGGGCCTA
ATCTCACCTA TGGCGAAAGA TAACGAAGGA GAGGAGTTAC GATTTAAGCT GACTCATAAC
ATCTTCTTCA ATGACAATCT GTTCCTTAAT CAGCAGCTGC AGTACCGTGA TTACACTTCA
GGCTTCTCTC GCCAGACGGG CGCCTATAAC TATGTGTACT GGAACCGTCG CGGCACCATC
AACGCCGATC CCCGTGCCCC TCTGGTCGAA GATGGTGTCT TGTACCCGTT TGCCGCACGT
CGTCAGGAGT ACCGTCAGGT ATCTGCCGAT GAGACCTCAT GGCAGTATTT CGCCGATCTC
AGATATGACT TCGAGCTCGC AGGTATCGAT AACGAGCTGT TAGTCAATGC TAACTTCGAA
GACCGGAATA TTCGCTTCAA GCAGTACTCT ATCTATGACG CCGATAAGGT GATTAAAAAC
AAGGCGGGTG AGGTTGTCTA CCAGGGAGCG TTGCCTTATA TCTATGATAT TCGCAAGCCA
AACTGGGCTG AAGGGAGTTT TGAGGATCAC GATCCTCTGA TGACCAGCAA CTATAACAAG
AAGGTCAATG CATGGGGCGT CGGCCTGCAG CATGTCGGCT ATTTCGATTA TGGATTTACC
ACTCGTATCG GCGTAGCGTT TAACGAGATC AAGCAGATCT ATGAGCACTT CGGTGTCGAT
GAGCGTTATC GCGCCAGCGC CGCAGAGCCT ACACCGGAAG CCGATACCAG TGACAACGGC
GTAACCTATA ACTTAGGCGT GACCTATATG CCGACGGACG ATCTCTCCTT CTTCGTTAAC
CACTCTAAGG GACGCACGGC TTACGGTGTC TTAGATGGTG TTGCCGGGAA TGGTAAAGAC
AGAAAAGATT CTGAGTCGGT GAGTGACGAC TTGGGTATGC GATTGAAGGC ATTTGACGAT
CAGATGCTGA CATCTCTGGT GCTGTTCAAG AGTTCACGCA CCAACCTTAG ATATAATAAC
CTGGATTTTG AAGCGGGTGT CAGTGGTCCT GAGGTGCAAG AATTTTTCTA TGATGGCAGC
GAAGAGACCA CTGGTGTCGA GCTGGATATG AACGCTCATC TCAATGAGCA GTGGGCCATT
AATGTAAACG GTGTTTATCA GGATGCGCGG GACAAGAAAG ATCCAAATCG AAGCAGCTAT
GATACCCGCC AGAAAGGTGT ACCTTACGTC ACTGCCAGTG CCTGGGTCAC CTATGGTGCC
GAGTGGTTCT CGCTGAGCAG TCCACTGGAC ATCAGCCTGG GTGCGAAGTA TGTCGATGAG
CGTAGCACGA ACTCAAGCTC ATTCGGTATC CCGACCGGGT ATGTACCGAG TTATACCGTG
GTAGATACCG CTGTCAGTTA TCAGGCCGAC AGCTGGAAGT TACAGCTTAA CGTGAATAAC
CTGTTCAACG AGACCTACTA CAATAAGGCG ATGTTCTTAG GTGGTATGCC GGGTGAGGAA
CGTAATGCTA AGGTGACATT TAGTTATCAG TTGTAG
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| Protein sequence | MNQFRFSLLA VACASTFLPM TLHAAQAEGL ENTDVERITV YGRQNQVVMN SGLATKSDMS
LMETPAAVVI VDEELINAQG VNSLQDLVRN ISGVTQAGNN YGIGDNLVIR GLGANYTYDG
MYGGAGLGNT FNPTRSLTNV ESVEVLKGPA TGLYGMGSAG GVINLIEKKP QFESKNEFGV
EVGQWDTYSL SLDSTGGLSD KLAYRVVAKT ARSDGYRDIG TDRDEVYSSL KYVFDDSQDL
MLSASYINDS IAVDSIGHPI RIYNADSVGG KNAGEASWED LINDPEGKGI QLSDEQRQQL
ADSLANSDGL TPYEFGHAGL ISPMAKDNEG EELRFKLTHN IFFNDNLFLN QQLQYRDYTS
GFSRQTGAYN YVYWNRRGTI NADPRAPLVE DGVLYPFAAR RQEYRQVSAD ETSWQYFADL
RYDFELAGID NELLVNANFE DRNIRFKQYS IYDADKVIKN KAGEVVYQGA LPYIYDIRKP
NWAEGSFEDH DPLMTSNYNK KVNAWGVGLQ HVGYFDYGFT TRIGVAFNEI KQIYEHFGVD
ERYRASAAEP TPEADTSDNG VTYNLGVTYM PTDDLSFFVN HSKGRTAYGV LDGVAGNGKD
RKDSESVSDD LGMRLKAFDD QMLTSLVLFK SSRTNLRYNN LDFEAGVSGP EVQEFFYDGS
EETTGVELDM NAHLNEQWAI NVNGVYQDAR DKKDPNRSSY DTRQKGVPYV TASAWVTYGA
EWFSLSSPLD ISLGAKYVDE RSTNSSSFGI PTGYVPSYTV VDTAVSYQAD SWKLQLNVNN
LFNETYYNKA MFLGGMPGEE RNAKVTFSYQ L
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