Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3234 |
Symbol | |
ID | 5614060 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3926712 |
End bp | 3928049 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640934172 |
Product | general substrate transporter |
Protein accession | YP_001474966 |
Protein GI | 157376366 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2271] Sugar phosphate permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTCAA AGAAAAACTT CGATGATATG GAGTTTACTC CACTTCATAG AAAAATAATG CTTTGGGGAA GCGGAGGTCC ATTTTTAGAT GGCTATGTAT TAGTTATTAT TGGACTTGCA CTTCAACAAC TTACACCAGA ATTAGGCTTA GATGCACAGT GGATCGGTTT AGTTGGTGCG GCGACACTGG CCGGTCTGTT TATCGGAACC GCGCTATTTG GCTATGTGGC AGATATAGTC GGTCGTAAGA AGATGTTTAT GATAGACATT ATTGCAATTG CAGTGCTTTC ATTTGCAACC ATGTTTATCT CATCTCCTAT AGAGTTAGTC ATCTTACGAT TCTTAATCGG AATCGTTATC GGAGCCGATT ACCCCATCGC CACCTCTATG GTTGCCGAGT TCTCACCCAC TAAGCAACGG GCATTCACAA TGGGCTTCAT TGCTGCCATG TGGTACGTTG GTGCTACTGC AGCCAACATG GTTGGCTACC TTCTCTACGA TGTTCAAGAT GGCTGGAGAT GGATGTTTGG TAGTGCGGTT ATTCCCTGTC TCGTTATTCT ACTCGGACGT TTTCACCTAC CTGAATCGCC AAGATGGTTA CTTAAAAAAG GCCGTGTGGA AGAGTGCCGT GAAATAATGC ATAAGTTTTT TGGCAAGGAT GTCGATATTA GTTTCGAAGA GGCGGAAGAG ACTAAATATA GTAAACTATT TGAACCTATC TATTTAAAAA GAATTATATT CATCGGCACC ATATGGAGCT GTCAGGTTAT TCCCATGTTC GCCATATATA CATTTGGGCC TCAAATAATC GAACTGCTTG GATTTACTGA GGGACAAGAT GCGGCCCTGG GCAATATCGT TATCAGTATA TTCTTTATGG CCGGGTGTAT CCCAGCGATG TACTGGCTGA ACTCTATCGG TCGCAGACCA CTTTTAATCG GCAGCTTTGC CATTATGACC GCCTCTCTGG CACTACTTGG CATAGTGCCA AATCCAAGCA TCTGGCTGAT TGTAGGCGCT TTTGCCATTT ACGCCTTCTT CTCAGGTGGT CCAGGGATCT TGCAGTGGCT CTATCCAAAT GAGCTGTTTC CTACAGAGAT ACGGGCGTCA GCCGTTGGCG CTGTGATGTC CTTTAGCCGA ATTGGTACCA TAGTCTCGAC TTATGCCCTG CCCGTTTATA TGGCCACCTA TGGCATATCA TCGACATTGC TTGTCGGTGC TGCCATATCA CTGATCGGAT TAGTTGTTTC AGTGTTCATG GCACCAGAAA CAAAAGGATT AACATTAGAA ACAACCAGTT CAGTTGATTT CACAGCTTCA GCTGAAGTAA GTAGATAA
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Protein sequence | MNSKKNFDDM EFTPLHRKIM LWGSGGPFLD GYVLVIIGLA LQQLTPELGL DAQWIGLVGA ATLAGLFIGT ALFGYVADIV GRKKMFMIDI IAIAVLSFAT MFISSPIELV ILRFLIGIVI GADYPIATSM VAEFSPTKQR AFTMGFIAAM WYVGATAANM VGYLLYDVQD GWRWMFGSAV IPCLVILLGR FHLPESPRWL LKKGRVEECR EIMHKFFGKD VDISFEEAEE TKYSKLFEPI YLKRIIFIGT IWSCQVIPMF AIYTFGPQII ELLGFTEGQD AALGNIVISI FFMAGCIPAM YWLNSIGRRP LLIGSFAIMT ASLALLGIVP NPSIWLIVGA FAIYAFFSGG PGILQWLYPN ELFPTEIRAS AVGAVMSFSR IGTIVSTYAL PVYMATYGIS STLLVGAAIS LIGLVVSVFM APETKGLTLE TTSSVDFTAS AEVSR
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