| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3229 |
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| Symbol | |
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| ID | 5613765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3920146 |
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| End bp | 3921690 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934167 |
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| Product | L-carnitine/gamma-butyrobetaine antiporter |
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| Protein accession | YP_001474961 |
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| Protein GI | 157376361 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGAAA AAACTTTGGA TGTAGGTATC ACTGAAGGAA CAAAGAAGAA GGTCACCATT
GACCCGAAAA TCTTCTTCCC GTCATTGATT GTGGTCATAT TGCTCTCTTA CTTGACAGTT
AGAGATCTGG ATGCGGCTAA TATAGTTATT AAGGATGTAT TTCACTATTT AACCCACTCA
TGGGGCTGGG CATTTGAGTG GTACATGATC GCAATGGCAG TAGGTTGGGC CTGGCTGGTC
TGGGGACCTT ATGCAAATAA CCGTTTAGGT CAGGAAACAC CAGAATTCAG TACCGGAAGC
TGGGTATTCC TGATGTTCGC CTCTTGTACT TCTGCCGCCG TACTGTACTG GGGATCGTTA
GAGGTCTATT ACTATGTGAC TTATCCACCT TTCGAACTTG ACTCCCTCTC GGTTCAAGCG
AAAGAGCTTG GTGTCGCTTA TAGTCTCTTC CATTGGGGAC CTCTGCCTTG GATGGGTTAC
GGCTTCTTCA CTGTTGCTTT GGGTTACTTC CTTTATGTTA AGAAGATGGA TGTGGTTCGC
CCCAGTGGCA CATTAGAGCC AGTTTTGGGT AAACATCATA AAGGTATTCT CGGTACTATT
ATCGATAATA TTTATGTTGT AGCACTGATT TTGGCTATGG GTACAAGTTT AGGCTTGGCG
ACACCTTTGG TGACTGAGTG TATCCAGTGG CTGTTCGGCA TTCCACGTAC CATTGAAGTC
GATACTATCG TTATTTCAGC ATGGATTATC TTTAACGCTG TGTGTGTAGC TTTCGGTCTG
ACCAAGGGCA TTAAGATTGC CAGTGATCTG CGTAGCTACC TGAGTATCAT CATGCTTGTT
TGGGTGTTCC TTATCGGTGC AACCAGCTTC ACAGTTAACT ACTTCACCGA GTCTGTGGGT
GTGATGCTTG ATTACCTGCC TCGCATGCTC TTCTATACCA GTTCTATCAG TGAAGGCAGC
TGGCCGCAAG ATTGGACCGT GTTCTACTGG GCGTGGTGGG TCGTTTACGG TATCCAGATG
TGTATCTTCC TGGCTAAGAT CTCTCGTGGT CGTACCGTGC GTCAACTTTG TCTGACAATG
GTGGGTGGTT TGACTGCTTC TACTTGGTTC CTTTGGACCA TCCTGGGCAG TAACACCATG
AATCTGATGA ATGAAAATAT CATCAACATG CCTCAACTGA TTGCAGATCA TGGTGCTCCC
AGAGCGATCA TCGAAACCTG GGCTGCTCTG CCAATGAGCA CTATCACCAT GTGGGGCTTC
TTCATCTTAT GTTTCCTCGC AACAGTTACC TTGATTAACG CCTGTTCTTA CACGTTGGCA
ATGTCTACCT GTAAGGGTGC CGATGCCGAC AACGAGCCAC CAGTCTGGGT TCGTGTGGGT
TGGTCTGTAC TGGTCGGTGT TATCGGTATC GTGTTGTTAT CACTTGGCGG ACTTAAGCCG
CTACAGACGG CGATTATTGC AGGTGGTGCG CCACTGATTG TCGTCAATGT CATGATTATC
ATCTCTTTCT TGAAAGACGC GCGTAAAAAC AAATGGGCCT CTTAG
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| Protein sequence | MNEKTLDVGI TEGTKKKVTI DPKIFFPSLI VVILLSYLTV RDLDAANIVI KDVFHYLTHS
WGWAFEWYMI AMAVGWAWLV WGPYANNRLG QETPEFSTGS WVFLMFASCT SAAVLYWGSL
EVYYYVTYPP FELDSLSVQA KELGVAYSLF HWGPLPWMGY GFFTVALGYF LYVKKMDVVR
PSGTLEPVLG KHHKGILGTI IDNIYVVALI LAMGTSLGLA TPLVTECIQW LFGIPRTIEV
DTIVISAWII FNAVCVAFGL TKGIKIASDL RSYLSIIMLV WVFLIGATSF TVNYFTESVG
VMLDYLPRML FYTSSISEGS WPQDWTVFYW AWWVVYGIQM CIFLAKISRG RTVRQLCLTM
VGGLTASTWF LWTILGSNTM NLMNENIINM PQLIADHGAP RAIIETWAAL PMSTITMWGF
FILCFLATVT LINACSYTLA MSTCKGADAD NEPPVWVRVG WSVLVGVIGI VLLSLGGLKP
LQTAIIAGGA PLIVVNVMII ISFLKDARKN KWAS
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