Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3225 |
Symbol | |
ID | 5613800 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3915094 |
End bp | 3915879 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934163 |
Product | carnitinyl-CoA dehydratase |
Protein accession | YP_001474957 |
Protein GI | 157376357 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAT CATTACACGT CACCCGAAAT GGCAGTATTT TAGAAATTAC CTTGGACAGA CCCAAGGCGA ATGCCATCGA TGCAAAAACA AGTTTTGAGA TGGGTGAAGT CTTCCTGGCA TTTCGTGAAG ATCCTGAGTT GCGCGTCGCC ATTATTACCG GTGCCGGTGC ACGTTTCTTC TCTGCAGGTT GGGATCTGAA AGCTGCGGCA GAAGGTGAAG CACCGGATGC AGATTTTGGT CCTGGTGGTT TTGCCGGACT GACCGAGATC TTCGATCTGG ACAAGCCGGT TATCGCAGCG GTGAACGGTT ATGCGTTCGG TGGCGGTTTT GAACTTGCAC TAGCAGCAGA CATGATTGTT TGTTCTGAAA ACGCCAGCTT TGCTCTACCT GAAGCCAAGT TAGGCATTGT GCCGGACAGC GGCGGAATGT TACGTCTTCC AAAATTGTTG CCACCTGCCA TCGTCAATGA GTTGATGATG ACTGGTCGTG GTATGGACGC CGAAGAAGCA TTGCGTTGGG GCGTCGTTAA CCGTGTGGTT GAAAGCGATA AACTGATGGA TACTGCACGT GAATTGGCTC AGCAAATCGC TCAAGGTGCG CCTTTAGCCA TTGCTGCTAT TAAAGAAATT TACCGTGAAA CCAGTGAGCT ATCGGTAGAA GATGGATATC GCCATATCCG CACCGCAAGC TTGAAAAACT ATCCGTCAGT ATTGCGTTCA GAAGATGCTT CAGAGGGACC TCTGGCCTTT TCTGAGAAGC GCGATCCTGT TTGGAAAGGC CGATAA
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Protein sequence | MSESLHVTRN GSILEITLDR PKANAIDAKT SFEMGEVFLA FREDPELRVA IITGAGARFF SAGWDLKAAA EGEAPDADFG PGGFAGLTEI FDLDKPVIAA VNGYAFGGGF ELALAADMIV CSENASFALP EAKLGIVPDS GGMLRLPKLL PPAIVNELMM TGRGMDAEEA LRWGVVNRVV ESDKLMDTAR ELAQQIAQGA PLAIAAIKEI YRETSELSVE DGYRHIRTAS LKNYPSVLRS EDASEGPLAF SEKRDPVWKG R
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