Gene Ssed_3225 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3225 
Symbol 
ID5613800 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3915094 
End bp3915879 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content49% 
IMG OID640934163 
Productcarnitinyl-CoA dehydratase 
Protein accessionYP_001474957 
Protein GI157376357 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAT CATTACACGT CACCCGAAAT GGCAGTATTT TAGAAATTAC CTTGGACAGA 
CCCAAGGCGA ATGCCATCGA TGCAAAAACA AGTTTTGAGA TGGGTGAAGT CTTCCTGGCA
TTTCGTGAAG ATCCTGAGTT GCGCGTCGCC ATTATTACCG GTGCCGGTGC ACGTTTCTTC
TCTGCAGGTT GGGATCTGAA AGCTGCGGCA GAAGGTGAAG CACCGGATGC AGATTTTGGT
CCTGGTGGTT TTGCCGGACT GACCGAGATC TTCGATCTGG ACAAGCCGGT TATCGCAGCG
GTGAACGGTT ATGCGTTCGG TGGCGGTTTT GAACTTGCAC TAGCAGCAGA CATGATTGTT
TGTTCTGAAA ACGCCAGCTT TGCTCTACCT GAAGCCAAGT TAGGCATTGT GCCGGACAGC
GGCGGAATGT TACGTCTTCC AAAATTGTTG CCACCTGCCA TCGTCAATGA GTTGATGATG
ACTGGTCGTG GTATGGACGC CGAAGAAGCA TTGCGTTGGG GCGTCGTTAA CCGTGTGGTT
GAAAGCGATA AACTGATGGA TACTGCACGT GAATTGGCTC AGCAAATCGC TCAAGGTGCG
CCTTTAGCCA TTGCTGCTAT TAAAGAAATT TACCGTGAAA CCAGTGAGCT ATCGGTAGAA
GATGGATATC GCCATATCCG CACCGCAAGC TTGAAAAACT ATCCGTCAGT ATTGCGTTCA
GAAGATGCTT CAGAGGGACC TCTGGCCTTT TCTGAGAAGC GCGATCCTGT TTGGAAAGGC
CGATAA
 
Protein sequence
MSESLHVTRN GSILEITLDR PKANAIDAKT SFEMGEVFLA FREDPELRVA IITGAGARFF 
SAGWDLKAAA EGEAPDADFG PGGFAGLTEI FDLDKPVIAA VNGYAFGGGF ELALAADMIV
CSENASFALP EAKLGIVPDS GGMLRLPKLL PPAIVNELMM TGRGMDAEEA LRWGVVNRVV
ESDKLMDTAR ELAQQIAQGA PLAIAAIKEI YRETSELSVE DGYRHIRTAS LKNYPSVLRS
EDASEGPLAF SEKRDPVWKG R