| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3223 |
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| Symbol | |
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| ID | 5613798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3913091 |
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| End bp | 3913681 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640934161 |
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| Product | carnitine operon protein CaiE |
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| Protein accession | YP_001474955 |
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| Protein GI | 157376355 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0663] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily |
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| TIGRFAM ID | [TIGR02287] phenylacetic acid degradation protein PaaY |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.143313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTGTT ATGAGTTTGA AGGTTTAGTG CCTGTGGTGG ACCCCAGTGC GTATGTTCAC
CCGACTGCGG TATTAATCGG TGATGTGCTA GTCGGCGCCG ATGTCTATAT CGGGCCAAAT
GCGTCGCTGC GTGGTGATTA TGGCCGGCTG ATTTTAGAGA AAGGTTCCAA TCTGCAAGAT
GGCTGTATCA TGCATGGCTA CGCCGGTATG GATACCGTGG TAGAGGAGAA TGGGCATATC
GGTCATGGTG CCATCTTGCA TGGCTGTGTG ATTAAGCGAA ACGCACTCGT CGGTATGAAC
GCGGTGGTGA TGGATGCCGC CGTGATAGGA CCTGACAGTA TTGTCGGTGC AATGAGCTTT
GTAAAAGGGG GCTTTAAAGG GGCGCCGCGG CAGCTCCTAC TTGGCTCGCC CGCTAAGGTC
ATTAGACAGG TGTCTGAGCA GGATCTCCAT TGGAAAGGAT TAAATACCCT GGAGTATCAG
CTGCTTGCCG GTCGATCGTC GAGGTCCATG CAGGAGGTCG AGCCGCTGAC TCGGGTGGAG
GCTAATCGTC CACGTCTAAC GGGTTCAACC GAGGTTCAGC CGAAAAGTTA G
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| Protein sequence | MPCYEFEGLV PVVDPSAYVH PTAVLIGDVL VGADVYIGPN ASLRGDYGRL ILEKGSNLQD
GCIMHGYAGM DTVVEENGHI GHGAILHGCV IKRNALVGMN AVVMDAAVIG PDSIVGAMSF
VKGGFKGAPR QLLLGSPAKV IRQVSEQDLH WKGLNTLEYQ LLAGRSSRSM QEVEPLTRVE
ANRPRLTGST EVQPKS
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