| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3218 |
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| Symbol | |
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| ID | 5613433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3904199 |
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| End bp | 3906745 |
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| Gene Length | 2547 bp |
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| Protein Length | 848 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934156 |
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| Product | putative TonB-dependent receptor for Fe |
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| Protein accession | YP_001474950 |
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| Protein GI | 157376350 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAACA CAAGATTTCA ACCAGATGGG TTAGCGCTGG CCATCGCCTT AGCTTTAACA
AGCTCAAACC TTTACGCGGA AACATCCGAA GTAACACAAA TCGATGCGAA CGTGGAAAAG
ATGTCTGTAC TTGGAAGCCG GGTATCGAGC CGTACGGCGA CTGAGTCGGC TGTTCCCGTC
GATATTATCA GTGCCGAAAG CCTAAGCCGT GGTGGCTTTA CCGAATTGGG TCAGAGCCTG
CAGGCGAGTG TTCCCTCATT TAACTTCAGC CGCACTCAAG TCTCCGATGG CTCCGATCTG
TTTCGCCCGG CGACACTGCG CGGACTCCAG CCCGATCAAA CCTTAGTGTT GATTAATGGT
AAACGTCGTC ATAACCAAGC TATTTTCGGC CTCAATGGCA CAGTTGGCGC AGGCGCAGCG
GGTACTGACA TGAATGCTAT CCCGCTTATC GCACTGAAAG ATGTGCAGGT ACTGCGTGAT
GGCGCAGCTG CACAATATGG CTCTGATGCC ATCGCAGGGG TGATTAACTT ATCACTCAAA
GACACCACAG GTGAGACGAC CGGTTACCTT CAAGGTGGCA CGACGGGCGA AGGCGATGGT
GACAACTATT CTATAGGGCT CAATACCGGT TTCGATCTCG GTGATGACGG CGGCTTTATC
AACCTGTCTC TTGAGTACCG TGATGCCGAC GGCACTAATC GTGCCCAGCC TGATATTGGT
GGTTCTTCTA CCATCGCGCC GGGTACCCTG TCCGATGATG TTCGTTGGGG ACAAGGTAAC
GCCGCTTCCG AGTTTGAATC AGTTTTTTAT AATGCCATGA TGCCGGTGGG CGATGTCGAA
CTCTACTCTT TTGGTGGCTA CTCTAACCGT ACGGCGCTGG GTAATGGTTT CTGGCGTAAC
TTCGATGAAG CGGCTAAAAA TATAGCCCAG GTGTACCCGG ATGGCTTCCT GCCTCGTATC
TATAATGAAG CGCAGGATAT CTCTGTCGCC GCAGGTATAC GTGGTGATAT CAACGATGAT
TGGCTGTTCG ATGTTTCGGG TGTTTATGGT CAAAACCGTT ATGATTTTGA TTCCAGAGAT
AGCATAAACG CTTCCTATGC GGCCGAGTAC CTACACAACA ACCCTGGTGC AACGGATGAA
GATATCGCGG CCAACTCCGG GCCAACATCG GGTTATTCCG GTGGTTTCCA TTTTGACCAG
ACCACATTTA ATGCCGATGT CTCAGGCTTT GTTGAGATAG GTCGCGATGC TCCGCTCTAT
GTTGCGTTCG GTACCGAATA CCGCACCGAA AACTATGAAA TTGTTGCCGG TGAATTGGCC
TCATATTCTT GCGGTATCTC TAATGCCGAT AGCGCCTTTC CGTCGGTCAT GGATCCGGAT
GTCTATGCTG GGTGTGGATT TCAGGCATAC CCAGGCTTGA GGCCCGATGC CGCAGGTCAG
GCCGACCGTA ACAGCTATGC CTTCTATCTG GATCTCGAGA CCCAGTTAAC CGATACCTGG
TCTCTGGGCA CGGCGGCTCG ATTCGAGGAG TTCTCCGATG CGGGCAGCGA TCTGGTGTGG
AAAGTCTCAT CCCGCTATGA AGTGACCGAT GACTTTGCCC TTCGTGGCGC GGTGTCTACC
GGTTTTCGGG CGCCATCCTT GCAGCAAAGT GCCTATACGG CTTACACCAC CAACTTAGGT
CCGGGTGGTG TACTGTCTGA CTCATTTACT GCTACCGCAG GTTCAGATTT TCCGTCGGCC
TTAGGGGTCG ACAGCTTAGA CCTTGAAACC TCCGAAAACT TAAGTCTTGG CTTCGTCTTC
AATGCGACCG ACGCGATCTC GGTGACCTTA GATGCATACA AGGTCAAGAT TAAAGACAGG
ATCACCTTGG GCAGCCTGCT CTCGGCCGAT GACGTTGCCT TTAGCCCCGA TGCCATGGCG
GCATTGAACG CCACAGGCGC CGATCAAGCT AACTACTTCT CAAACTCGGT CAACTCGACG
ACGCAAGGTG TCGATCTGAT TGTGACCTAT CGTACTGACC TGTTTGATGG CGACTTCAAT
GCCACGCTGG CAGGGAACCT CAATGAAACT GAGATAGACA GTGTGAATGC GGCAGACGGG
ATCCCCGAGG ATGTGGCGCT GGACGACCTT CAGCGTAGCT TCTTAACCGA TGGTCAACCG
AAGCAGCGTG CTACCTTAAC CTTCGATTAC AGCAGGAATG ATTGGCGCGG TATGCTCAGA
GCTAACTACT TCGGTGAAAC TAACGTGACT TACTTCGGTA ACGATCATAT CGGTCTGCCC
GATGAGTTAT CGCCAACAGG CTCGTTCCTA CCTACCAGCG TAGTGGAGGC TGCCGTGCTG
GTGGATATCA ATCTGGAGTA CCAGTTCACC GAATCCTTGA GCGTCTCTGC GGGCATCAAT
AACATCTTCG ATGTCACCCC AGATGAGCTG GGGGCGAATG AATCGCTCGA TTTCATCACC
AATCAGGCCT TTCAGTACCC GGTGCGCGCA CTGCCTTACG GCTTCGACGG CACGACCTAC
ACGGCAAAAG TTAACTTTAG CTTCTAG
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| Protein sequence | MMNTRFQPDG LALAIALALT SSNLYAETSE VTQIDANVEK MSVLGSRVSS RTATESAVPV
DIISAESLSR GGFTELGQSL QASVPSFNFS RTQVSDGSDL FRPATLRGLQ PDQTLVLING
KRRHNQAIFG LNGTVGAGAA GTDMNAIPLI ALKDVQVLRD GAAAQYGSDA IAGVINLSLK
DTTGETTGYL QGGTTGEGDG DNYSIGLNTG FDLGDDGGFI NLSLEYRDAD GTNRAQPDIG
GSSTIAPGTL SDDVRWGQGN AASEFESVFY NAMMPVGDVE LYSFGGYSNR TALGNGFWRN
FDEAAKNIAQ VYPDGFLPRI YNEAQDISVA AGIRGDINDD WLFDVSGVYG QNRYDFDSRD
SINASYAAEY LHNNPGATDE DIAANSGPTS GYSGGFHFDQ TTFNADVSGF VEIGRDAPLY
VAFGTEYRTE NYEIVAGELA SYSCGISNAD SAFPSVMDPD VYAGCGFQAY PGLRPDAAGQ
ADRNSYAFYL DLETQLTDTW SLGTAARFEE FSDAGSDLVW KVSSRYEVTD DFALRGAVST
GFRAPSLQQS AYTAYTTNLG PGGVLSDSFT ATAGSDFPSA LGVDSLDLET SENLSLGFVF
NATDAISVTL DAYKVKIKDR ITLGSLLSAD DVAFSPDAMA ALNATGADQA NYFSNSVNST
TQGVDLIVTY RTDLFDGDFN ATLAGNLNET EIDSVNAADG IPEDVALDDL QRSFLTDGQP
KQRATLTFDY SRNDWRGMLR ANYFGETNVT YFGNDHIGLP DELSPTGSFL PTSVVEAAVL
VDINLEYQFT ESLSVSAGIN NIFDVTPDEL GANESLDFIT NQAFQYPVRA LPYGFDGTTY
TAKVNFSF
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