Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3201 |
Symbol | |
ID | 5612728 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3864571 |
End bp | 3865437 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934139 |
Product | transcriptional regulator, putative |
Protein accession | YP_001474933 |
Protein GI | 157376333 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGAGC AAGCTCGAAA AAATATGAGT CCGGAAAATT CAAATCCGGA TAAACGTACG CAAAGCGCGA CCGAGACTCG GCACCGCAAT GCCACCACAA CGCCTGAAAT GCGTCGGTTC ATCCAAGAAT CCGACCTTTC AGTCACGCAA CTTTCCAAGG TGTTGAACAT AGGTGAAGCC ACGGTACGTA AGTGGCGCAA ACGTGACTCT GTCGAAAATA CGCCAAATAC GCCCCACCAT CTCAATACAA CGTTGACCCC CCTTCAGGAA TACGTGGTTG TAGGCTTGAG GTATCAGCTT AAGATGCCAC TCGATAAACT CCTTCGGGTA ACGCAAAATT TTATTAACCC CAATGTTTCT CGCTCCGGGT TAGCAAGATG CCTTAAACGT TACGGCGTAT CACGGGTGAG TGATATAGAG AGCCCTCACG TACCCGAGCG ATACTTCAAT CAACTGCCCA TCATTCAAGG CAGTGATGTT CAAACTTATA CTCTTCACTT CGAAACGCTA GCCGAGACAT TGGCAATGCC GAGTCCCGAT GGCGATAACG TGGTTCAGGT AGTGTCTCTC ACTATCCCTC CTCAGTTAAC CGAAGAGCAA CCAAGTTCAA TACTGCTTGG CATCGACCCG AGCAGCGACT GGATCTATTT AGACATATAC CAAGATGGCA ACACCCAAGC CACGAATCGA TACATCGCCT ATGTGCTTAA GCATGGGCCG TTTCATCTGC GTAAGTTGCT CGTTCGCAAC TACCACACCT TTTTACAGCG CTTCCCCGGT GCCAGACTCA ATACTGGTAC CACACATAAA AGCGCGGCAA CTAACAACAA GACGCCTGAA AACCAGGCAC CCAGCGGAGA CTCATAA
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Protein sequence | MAEQARKNMS PENSNPDKRT QSATETRHRN ATTTPEMRRF IQESDLSVTQ LSKVLNIGEA TVRKWRKRDS VENTPNTPHH LNTTLTPLQE YVVVGLRYQL KMPLDKLLRV TQNFINPNVS RSGLARCLKR YGVSRVSDIE SPHVPERYFN QLPIIQGSDV QTYTLHFETL AETLAMPSPD GDNVVQVVSL TIPPQLTEEQ PSSILLGIDP SSDWIYLDIY QDGNTQATNR YIAYVLKHGP FHLRKLLVRN YHTFLQRFPG ARLNTGTTHK SAATNNKTPE NQAPSGDS
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