Gene Ssed_3201 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3201 
Symbol 
ID5612728 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3864571 
End bp3865437 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content49% 
IMG OID640934139 
Producttranscriptional regulator, putative 
Protein accessionYP_001474933 
Protein GI157376333 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGAGC AAGCTCGAAA AAATATGAGT CCGGAAAATT CAAATCCGGA TAAACGTACG 
CAAAGCGCGA CCGAGACTCG GCACCGCAAT GCCACCACAA CGCCTGAAAT GCGTCGGTTC
ATCCAAGAAT CCGACCTTTC AGTCACGCAA CTTTCCAAGG TGTTGAACAT AGGTGAAGCC
ACGGTACGTA AGTGGCGCAA ACGTGACTCT GTCGAAAATA CGCCAAATAC GCCCCACCAT
CTCAATACAA CGTTGACCCC CCTTCAGGAA TACGTGGTTG TAGGCTTGAG GTATCAGCTT
AAGATGCCAC TCGATAAACT CCTTCGGGTA ACGCAAAATT TTATTAACCC CAATGTTTCT
CGCTCCGGGT TAGCAAGATG CCTTAAACGT TACGGCGTAT CACGGGTGAG TGATATAGAG
AGCCCTCACG TACCCGAGCG ATACTTCAAT CAACTGCCCA TCATTCAAGG CAGTGATGTT
CAAACTTATA CTCTTCACTT CGAAACGCTA GCCGAGACAT TGGCAATGCC GAGTCCCGAT
GGCGATAACG TGGTTCAGGT AGTGTCTCTC ACTATCCCTC CTCAGTTAAC CGAAGAGCAA
CCAAGTTCAA TACTGCTTGG CATCGACCCG AGCAGCGACT GGATCTATTT AGACATATAC
CAAGATGGCA ACACCCAAGC CACGAATCGA TACATCGCCT ATGTGCTTAA GCATGGGCCG
TTTCATCTGC GTAAGTTGCT CGTTCGCAAC TACCACACCT TTTTACAGCG CTTCCCCGGT
GCCAGACTCA ATACTGGTAC CACACATAAA AGCGCGGCAA CTAACAACAA GACGCCTGAA
AACCAGGCAC CCAGCGGAGA CTCATAA
 
Protein sequence
MAEQARKNMS PENSNPDKRT QSATETRHRN ATTTPEMRRF IQESDLSVTQ LSKVLNIGEA 
TVRKWRKRDS VENTPNTPHH LNTTLTPLQE YVVVGLRYQL KMPLDKLLRV TQNFINPNVS
RSGLARCLKR YGVSRVSDIE SPHVPERYFN QLPIIQGSDV QTYTLHFETL AETLAMPSPD
GDNVVQVVSL TIPPQLTEEQ PSSILLGIDP SSDWIYLDIY QDGNTQATNR YIAYVLKHGP
FHLRKLLVRN YHTFLQRFPG ARLNTGTTHK SAATNNKTPE NQAPSGDS