Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3164 |
Symbol | dapD |
ID | 5610749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3822527 |
End bp | 3823351 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934102 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_001474896 |
Protein GI | 157376296 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.922231 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.938148 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGCTT TACGCCAACG CATAGAGGCA GCTTTTGAAG CTCGCGCAGA AATAACCCCT AACTCAGTAG AACCGAGCGT TCGTGCTGAT GTAGAGAAAG CAATTAGCAT GCTTGATAAA GGTGAAGCTA GAGTTGCTGA GAAAATTGAT GGCCAGTGGC ACGTTCATCA GTGGCTAAAG AAAGCCGTTC TGCTCTCTTT CCGTATCTTC GATAATGGTG TTATCGATGG TGGCGAAACG AAATACTTCG ATAAAGTTCC CATGAAATTT GCCGATTACG ATGAAGCTCG CTTCAAAGAG GAAGCAATCC GAGTCGTTCC GCCAGCCACG GTACGTAAAG GCTCTTTCAT CGGTAAGAAC ACGGTTCTGA TGCCTTCATA TGTGAACCTT GGCGCCTATG TTGACGAGGG TACTATGGTC GATACCTGGG CCACGGTGGG CTCTTGTGCT CAGATAGGTA AGAATGTTCA CCTATCTGGC GGTGTTGGCA TTGGTGGTGT ATTGGAGCCA TTACAAGCAG GGCCAACTAT CATCGAAGAT AACTGTTTCA TAGGTGCACG TTCTGAAGTC GTTGAGGGCG TCATTGTCGA AGAGGGTAGC GTTATTTCCA TGGGCGTTTA TCTTGGACAA AGTACCCGTA TCTATGACCG TGAAACAGGT GAGGTTCATT ACGGAAGAGT ACCGGCTGGC TCGGTTGTCG TTTCAGGGAC CTTACCTTCA AAATGCGGAA CCTATAATCT TTACGCCGCT ATTATTGTCA AAAAAGTTGA CGCTAAGACT CGCGGTAAAG TGGGCATCAA CGAACTATTA AGAATCGTTG ACTAA
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Protein sequence | MEALRQRIEA AFEARAEITP NSVEPSVRAD VEKAISMLDK GEARVAEKID GQWHVHQWLK KAVLLSFRIF DNGVIDGGET KYFDKVPMKF ADYDEARFKE EAIRVVPPAT VRKGSFIGKN TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED NCFIGARSEV VEGVIVEEGS VISMGVYLGQ STRIYDRETG EVHYGRVPAG SVVVSGTLPS KCGTYNLYAA IIVKKVDAKT RGKVGINELL RIVD
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