| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3162 |
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| Symbol | |
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| ID | 5610747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3818881 |
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| End bp | 3819678 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934100 |
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| Product | methionine aminopeptidase |
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| Protein accession | YP_001474894 |
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| Protein GI | 157376294 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0024] Methionine aminopeptidase |
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| TIGRFAM ID | [TIGR00500] methionine aminopeptidase, type I |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00027219 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.447345 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTATAG TGATAAAGAG TGCAGAAGAG ATCGAGAAAA TGCGTGCAGC CGGAAAATTA
GCGGCTGACG TTTTAGAGAT GGTGGCGCCT TTTGTTAAAG TGGGTGTTAC GACAGATGAG
CTAAACGATA TCTGCGCTAA ATTTACAGAA GAACATGGCG CAACCTCAGC ACCTCTCGAC
TATCACGGTT TTCCAAAGTC TATCTGTACT TCAATCAATG AAGTGATCTG CCATGGGATC
CCAAGTTCAC GCGCTTTAAA AGATGGCGAT ATTATTAATA TCGATATCAC GGTCATCAAA
GATGGTTACC ACGGTGACAC TTCGAAGATG TTTTTGATTG GTGATGTCAG CGCTAAAGAT
ACGCGTCTTT GCCGCATCGC TCAAGAGAGC CTCTATGCCA GCATCCGTAA AGTTCGTCCG
GGTATGAAAC TAGGCGAAAT AGGTACCATA GTTGAGAAAT TTATTAAGAC TAAGAAAACT
GGCCTCGAGA AATACAGCAT TGTAAAAGAT TATTGTGGTC ATGGTATTGG TGCTGGTTTC
CACGAAGAGC CTCAAGTCAT GCATTATAAA AACAGCGACA AAACCGTCTT GCGCCCGGGC
ATGTGCTTCA CTATCGAGCC AATGATCAAT GCCGGTCGCC ATACTTGCAT TCTCGATAAA
GATGATAACT GGACAGTAAC GACCTCAGAT GGTAAAAAAT CAGCTCAATG GGAACACACA
CTGCTGATCA CTAAAACCGG AGTCGAAGTA CTTACTCTTC GTGAAGAAGA GGACTTTCCA
AGAGTGATTA ATCACTAG
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| Protein sequence | MSIVIKSAEE IEKMRAAGKL AADVLEMVAP FVKVGVTTDE LNDICAKFTE EHGATSAPLD
YHGFPKSICT SINEVICHGI PSSRALKDGD IINIDITVIK DGYHGDTSKM FLIGDVSAKD
TRLCRIAQES LYASIRKVRP GMKLGEIGTI VEKFIKTKKT GLEKYSIVKD YCGHGIGAGF
HEEPQVMHYK NSDKTVLRPG MCFTIEPMIN AGRHTCILDK DDNWTVTTSD GKKSAQWEHT
LLITKTGVEV LTLREEEDFP RVINH
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