| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3154 |
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| Symbol | |
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| ID | 5610113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3811011 |
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| End bp | 3812396 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934092 |
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| Product | putative membrane-associated zinc metalloprotease |
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| Protein accession | YP_001474886 |
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| Protein GI | 157376286 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000101225 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00850689 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATAGATT TTTTATGGAA CTTGGGTTCC TTTGTCATCG CTTTAGGCAT GCTGATCACG
GCACACGAAT ATGGTCACTT TTGGGTCGCC AGGCGTTGTG GTGTTAAAGT CGAGCGTTTC
TCTATCGGTT TTGGTAGAGC GATCTGGCGT AAAGTAGGGC AAGATGGCAC GGAATATGTG
CTTGCCATGA TTCCACTAGG TGGTTATGTC AAAATGCTCG ACGAACGCGT CGAGGAAGTG
CCTGATGAAT TAAAAGATCA GGCGTTTAAT CGTAAAAGTG TTTGGAAACG AATCGCAATC
GTCGCAGCGG GTCCCTTAGC TAACTTTATT TTTGCTATCT TTGCCCTCTA TTTCATGTAT
TTAATTGGCG TGCCGTCATT AAAACCCGTT ATCGAATCTA CTCAGCTAAA TACTCCGGCA
GCTCAAATCC AGGTTGATGA GCCTATGCTT ATTACCTCTG TTGGTGGTAA CACGGTTAGA
AACTGGGAAG AGGTGACGTA TGCCCTGGTG GGGCATATTG GTGATCCTGA GATCGATATC
TCAGTGTCTC CCTTGAGTCG TAGCAGTGAT TATTCTGACA CTGAAACCAC CCCCAGAGGG
ACTCACTACA CCTTAGATAC TAAAGGTTGG CAGTTTGATC CTGAAAAGGA ATCACCGATA
ACGTCTCTGG GGTTAGGTAT ATTCAGACCT GAAATAACCC CTACTTTAGG TTTAGTCTCA
CCCGATGGTG CAGCGGCTGC GGCCGGCATT GAGGTTGGAG ATACCTTAGT TGCGCTCAAC
GGCGAACCTT ATGGCGAGTG GGATGATTTT GTCTATAGCA TTAAGTCTTC ACCTAACCAA
GCCGTACAGG TCACAGTGAG ACGAGATGGT GAACAGTTAC AGTATAAAGT CATACCTCAG
GCGCGTGAAA ACGACCAAGG GTTGATGGAG GGGGTGATTG GTGTCGCTCC TACTCAGGCC
GAATGGCCTG AGAATATGCA ACTGCAGCTA GAGTATGGCT TCATTGAGTC ATTTGGTGTT
GCAGCAGATA AAACATGGCA ACTTGTCGTC GTCAGCATTA AGATGATTGG CAAGTTGGTC
ACCGGCGATG TGTCGGTGAA GAATTTAAGT GGACCAATAT CGATTGCACA AGGTGCAGGA
AGTAGTGCTA ACTATGGTTT GGTTTACTTT TTAGGTTTCC TCGCATTGAT CAGCGTAAAC
TTAGGCATTA TTAATTTACT GCCTTTGCCG GTGCTCGATG GAGGACACTT GTTATATTAC
TTCGTTGAAG TGATCACAGG CAGGCCTGTA CCCGAGAAGA TACAGGAAAT TGGATTCAGA
TTTGGGGCAG CGATGCTGCT AATGTTGATG AGCATAGCGC TTTTCAACGA TTTCTCCCGA
CTCTGA
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| Protein sequence | MIDFLWNLGS FVIALGMLIT AHEYGHFWVA RRCGVKVERF SIGFGRAIWR KVGQDGTEYV
LAMIPLGGYV KMLDERVEEV PDELKDQAFN RKSVWKRIAI VAAGPLANFI FAIFALYFMY
LIGVPSLKPV IESTQLNTPA AQIQVDEPML ITSVGGNTVR NWEEVTYALV GHIGDPEIDI
SVSPLSRSSD YSDTETTPRG THYTLDTKGW QFDPEKESPI TSLGLGIFRP EITPTLGLVS
PDGAAAAAGI EVGDTLVALN GEPYGEWDDF VYSIKSSPNQ AVQVTVRRDG EQLQYKVIPQ
ARENDQGLME GVIGVAPTQA EWPENMQLQL EYGFIESFGV AADKTWQLVV VSIKMIGKLV
TGDVSVKNLS GPISIAQGAG SSANYGLVYF LGFLALISVN LGIINLLPLP VLDGGHLLYY
FVEVITGRPV PEKIQEIGFR FGAAMLLMLM SIALFNDFSR L
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