Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3153 |
Symbol | |
ID | 5610201 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3808498 |
End bp | 3810981 |
Gene Length | 2484 bp |
Protein Length | 827 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934091 |
Product | surface antigen (D15) |
Protein accession | YP_001474885 |
Protein GI | 157376285 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000352533 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0112151 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGATTTA ATAAACTTTT TGCCTCGATG GTATTAGTCG GTGCGTCTTT ATCAGGGAAC GGTTGGGCAG AAACATTCCA ACCTTTTGAA GTAACCGATA TACAAGTGCA AGGGTTACAG CGTGTAGCTC TTGGTGCCGC GCTACTGACC ATTCCAGTTA AGGTCGGTGA TACGGTTGAT CAAGTTAAAC TCCAACAAGC AATTAAGAGC TTGTATGCCT CGACTAACTT CGAACATATC GAAGTGAGTC GTGATGGCGG TGTATTGGTG GTCACGGTCA AAGAGAGACC GACAATCAGT ACCGTGACAT TTGAAGGCAA CAAAGATATC AAAGATGAAC AGCTTCAGGA GAGTCTGGAT GGCTCCGGGG TCAAGGTCGG TGAGTCATTA GACCGTACCA TGTTATCGGG TATCGAGAAG AGTCTTCAGG ATTTCTATTA TGGTGTGGGT AAATACGGAG CTAAAGTTGA AGCTCAGGTT ATTAACTTGC CTCGTAATCG TGTAGAGCTA AAGTTCAACT TTACTGAAGG GTTAGCCGCA GAGATCAAAC AGATCAACGT CGTTGGTAAT GAAGTCTTCT CCGATGCTGA ACTTATCGGC ATGCTGGAAC TAAAAGACTA TGTCGCCTGG TGGGATCTGT TCGGTGAGCG CCGCTATCAG AAACAGAAAC TTCAAGCCGA TCTCGAGACG GTAAAATCTT TCTACCATAA CCGAGGTTAT ATTCGCTTCG ATGTCACCTC GACACAAGTT GCGATGACGC CTGACCGTAA GGGTCTCTAT ATCACTATCA ATGTCGATGA GGGCGAGCAG TATAAGGTTA CAGAAGTTAA CCTGACTGGC GACCTGATGG GGCGTGAGAA AGTGATGAAG GGTATTCTTC CTATTAAAGA GGGAGACATG TATAACGGTG CCGATGTGAC ATTTGCCGAA GAGATGTATG GCAAGTATCT GGGCCGTTTC GGTTATGCCT ACCCGGAAGT TAAGACCTAC CCGGAAATTA ATGATGAGAC TAAAGAAGTT ACTCTTAACG TTAATATTCA ACCGGGTAAA CGCGTCTATG TACGTAATAT CAACTTTTCC GGTAACCAGG TCACCAAAGA CGAAGTAATG CGTCGTGAGC TTCGTCAGAT GGAAGGTGCG TGGTTAAACT CGGCACAGGT TGAGCAATCT AAAGCCCGCC TGAACCGTTT AGGTTATTTT GAAACCGTAG ATACCGAAAC GGTTCAAGTA CCAGGTACCG ATGATCTGGT CGATGTTGCC TTCAATGTAA AAGAGCAGCC ATCGGGTTCA TTTAATGCCG GTGTCGGTTA TGGTACTGAA TCAGGGTTGA GTCTGCAGTT TGGTGTTCAG CAGAGTAACT TCTTAGGTAC GGGTAACCAA GCGGGTATTA ACCTAAATAC TAACAAGTAT TCAAAGAACG TGAATGTCTC TTATACCGAC CCATACTTTA CCAAAGATGG TGTTAGTTTA GGTGGTAGTA TTTACTGGAA CGAGTTTGAC GCGCATGAGG CCAACCTCGA GCGTTATAAG AACAGCTCTT ATGGTATTGC GCTTAACTCT GGTTTCCCTA TCAACGAAAC CAATCGAATT AACGGTGGTA TTGGCTATCG TCATAACTCG ATCTCTGAGA TCTCGGCTTA TGAGCAGGCG CTGCGCTTCT ATAATATCTA CCGTGACTCA GACGATCCGA ATGCCGACCT GGCCTTCAAT AACTTCGAGG CTAACTTAGG TTGGTACCGT AGTACGCTTA ACCGGGGTAC CTTCCCATCA GATGGTTCAT CTCAGCGCTT GAGCACTAAG GCGACGATAC CGGGTTCAGA TCTGCAATAC TTTAAGGCAG ATTTTGATAC CAGCTTCTAC TTCCCAATCA ACCGTAGTCA CAGCTTTGTT ATGTTGACTA AGGCTCGTGT TGGTTACGGT AATGGTTATG GTCAGTTTAA CGATAACGAT CAGATATTAC CTTTCTGGGA AAACTATTAC TCAGGTGGTA GTAGTTCCTT ACGTGGCTTC AAGTCTAACT CTGTAGGCCC ACGTTCATTC TACCTGTATC GAGGTAGTGA GCCATGTTCT CCGGATCCTT CGGGTTCGGG CTGTTATCTA CCGGGCGATC CAAACCAAAT TCAGGTCAGC GATGGTCGCT CAATTGGTGG TAATGCGATT GCAACAGCCA GCATAGAGAT GATTGTGCCA ACGCCATTTT TGGATGAGGC TTATACCAAT TCAGTACGTA CCAGTTTCTT CGTCGATGCC GGTAACGTAT GGGATACCGA GTTTGATTAT GACTCATACC GTTATCTTCC TGCACACGAG TTTGATAAGC TTGAAGATTA TGCCGACCCG AGCCGGATCC GCGCATCTGC GGGTATGAGC GTACAGTGGC TGTCACCGAT GGGACCTATG GTGTTTAGTC TTGCTTGGCC AATTAAGGAA TACGAGGATG ATGAGACTGA GATCTTCTCG TTCAATATTG GCAAAACTTT CTAA
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Protein sequence | MRFNKLFASM VLVGASLSGN GWAETFQPFE VTDIQVQGLQ RVALGAALLT IPVKVGDTVD QVKLQQAIKS LYASTNFEHI EVSRDGGVLV VTVKERPTIS TVTFEGNKDI KDEQLQESLD GSGVKVGESL DRTMLSGIEK SLQDFYYGVG KYGAKVEAQV INLPRNRVEL KFNFTEGLAA EIKQINVVGN EVFSDAELIG MLELKDYVAW WDLFGERRYQ KQKLQADLET VKSFYHNRGY IRFDVTSTQV AMTPDRKGLY ITINVDEGEQ YKVTEVNLTG DLMGREKVMK GILPIKEGDM YNGADVTFAE EMYGKYLGRF GYAYPEVKTY PEINDETKEV TLNVNIQPGK RVYVRNINFS GNQVTKDEVM RRELRQMEGA WLNSAQVEQS KARLNRLGYF ETVDTETVQV PGTDDLVDVA FNVKEQPSGS FNAGVGYGTE SGLSLQFGVQ QSNFLGTGNQ AGINLNTNKY SKNVNVSYTD PYFTKDGVSL GGSIYWNEFD AHEANLERYK NSSYGIALNS GFPINETNRI NGGIGYRHNS ISEISAYEQA LRFYNIYRDS DDPNADLAFN NFEANLGWYR STLNRGTFPS DGSSQRLSTK ATIPGSDLQY FKADFDTSFY FPINRSHSFV MLTKARVGYG NGYGQFNDND QILPFWENYY SGGSSSLRGF KSNSVGPRSF YLYRGSEPCS PDPSGSGCYL PGDPNQIQVS DGRSIGGNAI ATASIEMIVP TPFLDEAYTN SVRTSFFVDA GNVWDTEFDY DSYRYLPAHE FDKLEDYADP SRIRASAGMS VQWLSPMGPM VFSLAWPIKE YEDDETEIFS FNIGKTF
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