| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3146 |
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| Symbol | dnaE |
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| ID | 5614195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3800129 |
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| End bp | 3803602 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934084 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_001474878 |
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| Protein GI | 157376278 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0156717 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGATC CCCGTTTCGT GCATCTGCGT GTTCACAGTG ACTTTTCTAT GTCAGATGGT
TTGGCGAAGG TTAAACCCAT CATAGGGAAA GTAACAGAAC TCGGCATGCC AGCTGTGGCA
CTGACCGATC AGACTAACCT GTGTGGCTTG GTCAAGTTCT ATGGTGCCTG CCACGGAGCC
GGGATCAAGC CGCTAATCGG CGCCGATTTT TGGGTCAAGG TGCCGGGATT TGATAAAGAT
CTGTGTTCTG TGACCGTTTT GGCTATGGAT AACGATGGGT ATTTGAACTT AACCTTACTT
ATCAGCGATG CCTATCTCAG AGGTCATATA GATGATAGAG CAGTCATAGA CCATGGGTGG
CTAGCTAAAT ACAGTAAAGG ATTGATCTTG CTCTCCGGTG GCAGACTCGG GGATGTTGGG
CGGGCACTGT TGAAAGGGAA TCAGGCCCAA GTAGACTCAT TAGTCGAGTT TTATCAGACA
CACTTTCCCG ACCGATATTA TCTGGAGTTA TTGCGTACCG GTCGTCCCGA TGAGGAGCGC
TACCTGCATA TGGCGGTAGA GCTTGCTACT GAGAAAGGTT TACCTGTCGT CGCCACTAAT
CAGGTGGTCT TTAATAGTCC TGATCTGTTC GAAGCTCATG AGATCCGTGT GGCTATCTCA
GATGGTTTTA CCCTGGCCGA TCCTCGCCGT CCGAAGAAGT ACAGCGCCGA GCAGTATTTC
AAGAGCAGTG AGCAGATGTG TGAGTTGTTT GAAGACATTC CCGAAGCGAT TGATAATACG
GTTGAGATAG CTAAGCGCTG CAATGTTACC GTTCGGCTCG GCGAGTATTT CCTGCCTAAC
TTCCCTACAG GAGATCTGAG CATTGAAGAC TTCCTGGTCG AAGTGTCTGA GAAGGGGCTC
GAAGAGCGAT TAGAGTTTCT CTTTCCCGAC CCTGAGGTGA GGGCTGAGAA ACGACCTGCG
TATGATGAGC GTCTCGATGT CGAACTTAAG GTCGTTAACC AGATGGGGTT CCCCGGCTAC
TTCCTCATCG TGATGGAGTT TATTCAGTGG GGGAAAGATC AGGATATTCC TATCGGTCCG
GGTCGTGGTT CCGGTGCCGG GTCCCTGGTT GCATATGCCC TCAAAATCAC CGATCTCGAT
CCCTTGGAAT ATGAGCTGCT GTTCGAGCGA TTCCTGAACC CGGAACGTGT TTCTATGCCG
GATTTCGATA TCGATTTCTG TATGGATAGG CGAGATGAGG TGATCGACCA TGTGGCCGAA
CTCTACGGCC GAGATGCGGT ATCTCAAATT ATTACCTTCG GTACTATGGC CGCAAAAGCG
GTTATTCGCG ATGTAGGACG TGTCTTAGGT CACCCTTATG GTTTCGTTGA CCGGATATCG
AAAATGGTGC CAGCCGAGCC CGGAATGACT CTGGCGAAGG CGTTCGAGGT GGAACCTGCA
CTGCAGGAGT CATACGACGC CGATGAGGAG GTGAAAGACC TTATCGACAT GTGCCGCACC
TTAGAAGGTG TCACGCGTAA CGCGGGTAAG CACGCCGGTG GTGTGGTGAT CTCACCCACC
ACTATTACCG ATTTTGCGCC AATTTATTGT GATGCCGAAG GTCTTAATCC GGTGACTCAG
TTCGATAAGA ACGACGTCGA GACCGCCGGT TTAGTTAAGT TCGACTTCTT GGGGCTGCGA
ACCCTGACGA TTATCGATTG GGCGTTGCAG ATGATCAATC CCAAACTGAA GAGGCTGGGC
AAAGATCCTG TGCGTATCGA GTCGATTCCA CTGGACGATC CTGCCAGCTT CAGGTTATTG
CAGCGTTATG AGACGACGGC GGTATTCCAG CTTGAATCTC GTGGAATGAA AGACTTGATT
AAGCGTCTTC AGCCGGATTG CTTCGAAGAT ATGATCGCAC TGGTCGCCCT GTTCAGACCA
GGACCGCTTC AATCGGGCAT GGTAGATAAC TTTATTGAGC GTAAGCATGG CCGTGAAGCC
GTCTCTTATC CCGATGCTGA ATATCAACAT GAGTCGCTGC AATGGGTACT CGAGCCCACC
TACGGCATTA TCCTCTATCA AGAGCAGGTG ATGCAGATTG CTCAGGTTCT CGCGGGATAC
TCACTGGGTG GGGCGGATAT GCTTCGCCGT GCTATGGGTA AGAAAAAGCC CGAGGAGATG
GCCAAGCAGC GTGGTACCTT CGAAGAGGGC GCGATTAATA ATGGTATCGA CGGTGAACTG
TCGATGAAGA TCTTCGATCT GGTGGAAAAA TTCGCGGGTT ACGGGTTTAA CAAATCTCAC
TCTGCGGCTT ATGCTTTGGT TTCCTACCAA ACTCTCTGGC TGAAGACGCA TTATCCGGCC
GAATTTATGG CGGCGGTAAT GTCTGCCGAT ATGGATAACA CAGATAAGAT CGTTATCTTA
GTCGATGAGT GTGAGCGCAT GGGCATGCCT CTGCTACCGC CTGATGTTAA CAAGGGACTG
CTAAAATTCA ACGTCGATGA TGAGGGGAAA ATTGTCTACG GCATTGGCGC GATTAAAGGG
GTGGGTGATG GGCCGGTAGA GTCAATTTTG TCGGCTCGAA AAGATGGTCC ATTTAAAGAC
CTATTCGATT TTTGTGCTCG TGTGGATCTG AAAAAGCTCA ATAAACGTAT CATGGAAAAG
CTGATCTGTG CCGGAGCCCT GGATAATCTG GGCCCTCACC GCGCCGCTAT GCTAGCAACT
TTACCCGAGG CGATTCGGGC GGCAGATCAA AATGCTAAGG CCGAAGCTAT CGGTCAACAT
GATATGTTCG GTTTGCTCAA TAGCGATCCT GAAGATGTGA AACAGCAATT TGTTGAATGT
ACCCCTTGGC CCGATAAGGT GTGGTTGGAA GGCGAGCGGG AGACATTAGG CCTGTATCTG
ACGGGCCACC CGATTAATCA GTACCTGAAA GAGTTAAAGC ATTATACGTC GGGACGCCTT
AAGGATGTGC ATCCTACCGA GCGTGGCAAG ACCATGAAGG CGGCGGGCTT AGTGGTTGCG
ACCCGTGTGA TGATGACTAA ACGTGGTTCT AAGATGGGGC TTGTGACGCT TGACGATAAG
AGTGCTCGTT TAGAGGTGAT GCTATTTACC GAGGCGTTCG AGAAGTTTAA TCACCTGCTG
GAGACCGACC GCATTTTAAT CATCGAAGGT GAGGTGAGCT TCGACGATTT TTCCGGTGGG
AACCGTATGA CGGCCAGAAA TATCATCGAT ATGGGTGAGG CCAGAAGCCA TTTCGCCAAA
GGTGTCGAGG TCGATATAGA TGCAGAAGCT ATCGATCTGC CCTGGTTGGA GACATTTAAA
GAAGCCGTTG AGCCATGGAA AAATGGTGCC GTGCCCGTGG TCGTTAATTA CGCGCAATCT
CAAGCCAAGG CTCAGTTCAG GCTCGGTGAG AGTTGGCGGG TAAACCCGAC CGATGAGTTG
ATGCTGGCGT TGGAGACCTT AACGGGGGCC GGTAAGGTGA GGATCCTTTT TTAA
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| Protein sequence | MSDPRFVHLR VHSDFSMSDG LAKVKPIIGK VTELGMPAVA LTDQTNLCGL VKFYGACHGA
GIKPLIGADF WVKVPGFDKD LCSVTVLAMD NDGYLNLTLL ISDAYLRGHI DDRAVIDHGW
LAKYSKGLIL LSGGRLGDVG RALLKGNQAQ VDSLVEFYQT HFPDRYYLEL LRTGRPDEER
YLHMAVELAT EKGLPVVATN QVVFNSPDLF EAHEIRVAIS DGFTLADPRR PKKYSAEQYF
KSSEQMCELF EDIPEAIDNT VEIAKRCNVT VRLGEYFLPN FPTGDLSIED FLVEVSEKGL
EERLEFLFPD PEVRAEKRPA YDERLDVELK VVNQMGFPGY FLIVMEFIQW GKDQDIPIGP
GRGSGAGSLV AYALKITDLD PLEYELLFER FLNPERVSMP DFDIDFCMDR RDEVIDHVAE
LYGRDAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KMVPAEPGMT LAKAFEVEPA
LQESYDADEE VKDLIDMCRT LEGVTRNAGK HAGGVVISPT TITDFAPIYC DAEGLNPVTQ
FDKNDVETAG LVKFDFLGLR TLTIIDWALQ MINPKLKRLG KDPVRIESIP LDDPASFRLL
QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREA
VSYPDAEYQH ESLQWVLEPT YGIILYQEQV MQIAQVLAGY SLGGADMLRR AMGKKKPEEM
AKQRGTFEEG AINNGIDGEL SMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHYPA
EFMAAVMSAD MDNTDKIVIL VDECERMGMP LLPPDVNKGL LKFNVDDEGK IVYGIGAIKG
VGDGPVESIL SARKDGPFKD LFDFCARVDL KKLNKRIMEK LICAGALDNL GPHRAAMLAT
LPEAIRAADQ NAKAEAIGQH DMFGLLNSDP EDVKQQFVEC TPWPDKVWLE GERETLGLYL
TGHPINQYLK ELKHYTSGRL KDVHPTERGK TMKAAGLVVA TRVMMTKRGS KMGLVTLDDK
SARLEVMLFT EAFEKFNHLL ETDRILIIEG EVSFDDFSGG NRMTARNIID MGEARSHFAK
GVEVDIDAEA IDLPWLETFK EAVEPWKNGA VPVVVNYAQS QAKAQFRLGE SWRVNPTDEL
MLALETLTGA GKVRILF
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