| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3145 |
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| Symbol | |
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| ID | 5614194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3798643 |
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| End bp | 3800127 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934083 |
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| Product | tRNA(Ile)-lysidine synthetase |
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| Protein accession | YP_001474877 |
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| Protein GI | 157376277 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
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| COG ID | [COG0037] Predicted ATPase of the PP-loop superfamily implicated in cell cycle control |
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| TIGRFAM ID | [TIGR02432] tRNA(Ile)-lysidine synthetase, N-terminal domain
[TIGR02433] tRNA(Ile)-lysidine synthetase, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0165615 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATC GTACCCCTGT CCCGGAATTT GATGCCAGCA GTTTAATTGC CGACTGTGTC
GCTAAGGCGT CTGTCGGTTC CGGCTCTCAG TTAGTGCTCG CTTACAGTGG CGGGGTCGAT
TCAGAGGTGT TGGCGCAAGG ATTAGCCAGC TTTGCCAGGC ACAACCCCCA ATATCGTTAT
CTCTTGGTGC ATGTTCATCA TGGGTTGAGC TCAAATGCCG ATGCTTGGGT TCGTCATTGT
CAGTCACAGG CTGCTAAATA TCAGTTACCT ATCGAAATCA GACAGGTAAA GGTAAAAATG
GGGCCCAGGC TCAGTATTGA GGCTCAGGCC CGTAGTGCCC GCTACGAGGC GATAACTTCC
TTGATGGCAC CGGGTGATGC CCTGTTAACC GCCCATCATT TAGATGATCA ATTAGAGACC
GTTTTGCTTG CACTCAAACG AGGACTGGGC CCTAAAGGCT TGTCGGCCAT GGGCGAGGTG
CAGGCATTCG ATAACAACAA ACAACTGCTC AGGCCGCTAT TGTCTATTAG TCGCGAACAG
ATCGAGTCGT TGGCAACCAG TCAGGCGATC GCTCATATTG AAGATGAGAG TAATCAAGAC
ACTAAGTATG ACCGGAATTT TTTGCGTCTG GAGATCATCC CCAAGCTTAA GGCTCGCTGG
AGTTCGATTG CCGTGACGGC GAGTCGAAGT GCCGCCTTAT GTGCTCAGCA GCAAGCTGTT
ATCGATGAGG AGGTGAGTAA ACGCTTACCT TCATATATTG TGCCAGTCAG CCAGGGAAAT
GGCACAGCTC TGGAACTCTC AGACTTAAGA GAACAAGGGG TTAATTGGCA GCTCTTGCTT
CTCAGGGGCT ATATCGAATA TCTCGGCTTT GCGCCATTAT CGCAAGTTCA ACTGGAACAG
GTGCTATATC AGTTACTCGA TGCCAGAGTC GATGCTAAGG TCGAGCTCAG ATTAGGTGAT
ACCCTTGTCA GGCGCTTCAG GGGACGGGCT TATCTCTCCT CTGTTGAAGC TGAGCATGCT
GAGCGAATAA ACGCGCCGAT ACTCGAGTGG GATTTAACCC CCTTGCTATC ACCCGATTGC
GATGGGGCTG GGGGTGTCGT TCAAATAGAG AGTAGTGAAG CTGAGCTGCG CTTGTCAGTT
TCAGAAATAA AATCGCTACA GGTTCGCATG TTATCTCAAC TCGACAGGGT GCGTTTACCC
AATGCTGATG AGAGGGTGAC CGTTCGTTTC GCTATTGCGG GTAGTACGCG ATGCTCTCCC
CATAACAGGC AGAAGGGACG TGAGCTTAAG AAGTTATGGC AGGAGTCTGG CATTCCTCCT
TGGGAGCGAG AGAAGGTGCC GTTTATCTTT TACAATAATG TGTTGGTCTG CGCCGTCGGT
TATTGGATTG AGAAGGCGTT TGTGTGTCGG GATGCGAGTG CTGGTTTGAA CTTTAAAATC
GTAACTCGTA ACTCAAGTTT CCCTTTTACT CACCATCAAC CCTGA
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| Protein sequence | MSDRTPVPEF DASSLIADCV AKASVGSGSQ LVLAYSGGVD SEVLAQGLAS FARHNPQYRY
LLVHVHHGLS SNADAWVRHC QSQAAKYQLP IEIRQVKVKM GPRLSIEAQA RSARYEAITS
LMAPGDALLT AHHLDDQLET VLLALKRGLG PKGLSAMGEV QAFDNNKQLL RPLLSISREQ
IESLATSQAI AHIEDESNQD TKYDRNFLRL EIIPKLKARW SSIAVTASRS AALCAQQQAV
IDEEVSKRLP SYIVPVSQGN GTALELSDLR EQGVNWQLLL LRGYIEYLGF APLSQVQLEQ
VLYQLLDARV DAKVELRLGD TLVRRFRGRA YLSSVEAEHA ERINAPILEW DLTPLLSPDC
DGAGGVVQIE SSEAELRLSV SEIKSLQVRM LSQLDRVRLP NADERVTVRF AIAGSTRCSP
HNRQKGRELK KLWQESGIPP WEREKVPFIF YNNVLVCAVG YWIEKAFVCR DASAGLNFKI
VTRNSSFPFT HHQP
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