| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3143 |
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| Symbol | |
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| ID | 5614192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3795647 |
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| End bp | 3797596 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934081 |
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| Product | potassium efflux system protein |
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| Protein accession | YP_001474875 |
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| Protein GI | 157376275 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0475] Kef-type K+ transport systems, membrane components
[COG0569] K+ transport systems, NAD-binding component |
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| TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0190825 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACACA GTTTTCTTAT TCAAATTCTT CTGATGCTTG TGGTGGCAAT TATCTCGATT
GCGCTGCTGA GACGGGCAGG ATTGCCTGCT ATCTTGGCCT ACCTCCTCAC GGGCGTTATC
AGTGGTCCCT CTGGTTTCAA CTGGTTTAGT CAACATCAGA TGCAATCTGT TGCCGAGCTC
GGCGTCGTGT TACTCATGTT CAGTTTAGGT CTGGAGTTTT CGCTTCCCAG ATTATGGGCG
ATGAGACGCA CCGTATTTGG TCTGGGTAGC GCCCAAGTTG TCGTGACAAC GGTACTGGCC
ACCGGTATCT CATTTTTGGG GGGACTAACC TTAGTTGAAT CTGTCGTGGT CGGCTCGGCC
ATCGCACTCT CTTCCACGGC TATCGTGCTT AAGTTACTTA ATGAGCAAGG CTGGTTAAGG
CGACGTCACG GTGAGCTTTC TGTCAGTGTC CTGTTATTTC AAGATCTTGC CGTTGTCCCG
CTATTGATCC TATTGCCACT TCTGGCCTCT GGGGGAGAGG TGTTGTCGGC GAAAACCATA
GCTTATGCCA TGGTTGAAGG TGTCCTGGCC TTCGTTGCCT TGATGGCTTT CGGTAAGTGG
GGCCTGCCGA GATTATTTGA TGAAGTTGCC CGCTCACGCT CCAATGAGCT ATTTATGCTC
TCGACCCTGG TGGTTGCGTT GTTAACCGGA GCCTTGACTC AATGGCTGGG TTTGTCCATG
GCGCTCGGTG CCTTTATGGC AGGTATGTTG CTGGGAGAAA GCCAGTATAA GCGGCAGCTT
GAGGCGGATA TCAGACCATT TCGTGATCTA CTGATGGGGT TGTTTTTTAT CTCAATTGGT
ATGTTGCTCG ACTTCACGCT CGTTTTTCAG TTCTGGTGGC AGATCTTAAT CTTGCTGGTG
GCCGTGATTT TCGGCAAAGC CTTAGTGATT TTCGCTTTGT TAAGAGCCGC CCGTGAATCA
TTCCGAACCT CAATGTCGAC GGCCTTGAGT CTGGCTCAGG TGGGGGAATT TAGTTTCGTG
GTGTTGGCAT TGGCGGTTAA TTATCGACTT CTCGATATCG CCCTAAGCAC TAAATTGGTT
ATGGTGGCGG TGCTGTCAAT GGCGGTAGCT CCCTGGTTGG TGAGGCACAG CGTCGATGTC
GCTCGTTACC TGCAGGGGGT TAGACCTAAA GCCGAGAAGC CGCCAGCCAT TGAGCCGAAT
ATAGAGCATG AAAACGATCT GGTATTAATC CTGGGCTATG GCCGCGTCGG GCAAACTATC
GCCCGGTTCA TGAAAACGGA AGCGGTACCA TTCTTGGTAC TTGATCTGGA TCCCACCCGC
GTATCTGAGG CGAGAAAAGC GGGGGAACCG GTTTATTTTG GCGATGTCTG TAATCGCAGC
ATTCTTAAAC AGGCCAAAAT CCGGGAGGCG AAGCTGATTG TATTGACCTT TAGTAATGGT
CGAATCCTCG AGGAGGTGTT GCCCCTGTGT CGTCAACTGG CCCCGGATTC AAAAATATTG
GTCAGAACCC GTGACGATAC CGGGATGGAA GAGCTGGAGG CTGCGGGAGC CAGCCAGGTT
ATCCCCGAGA CGCTTGAGGG CAGTTTAATG CTCGTTTCTC AGGTGCTGTA TCAGTGCGGC
GTTCCGCTGA CCAGAATTTT AAAACGACTG GAATATGAGA GACGTAACCA TTATCAGTAT
CTCCATGGTT TCTTTTCAGG AGCCGAGACC GACTTCACTC TTGAGCACCT GCACGCCGTT
GCGCTGCCCA AGGGAGCAAA CGCCGTAGGC TTGACCTTGG CCGACATTCC CTGGGAGAAA
CTTAGGGTCG AGCTCCGGGC CGTGAGGCGT TCAGGCTCAG AGGTTGAAAG CCCGGAGTTA
GATTGGAAAA TTCGTCCGGG TGATACCTTG ATCATTCTCG GTAAACCGCG CCGAATAGAG
AAGGCTGAGC ATTTCTTGTT GCAAGGCTAG
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| Protein sequence | MEHSFLIQIL LMLVVAIISI ALLRRAGLPA ILAYLLTGVI SGPSGFNWFS QHQMQSVAEL
GVVLLMFSLG LEFSLPRLWA MRRTVFGLGS AQVVVTTVLA TGISFLGGLT LVESVVVGSA
IALSSTAIVL KLLNEQGWLR RRHGELSVSV LLFQDLAVVP LLILLPLLAS GGEVLSAKTI
AYAMVEGVLA FVALMAFGKW GLPRLFDEVA RSRSNELFML STLVVALLTG ALTQWLGLSM
ALGAFMAGML LGESQYKRQL EADIRPFRDL LMGLFFISIG MLLDFTLVFQ FWWQILILLV
AVIFGKALVI FALLRAARES FRTSMSTALS LAQVGEFSFV VLALAVNYRL LDIALSTKLV
MVAVLSMAVA PWLVRHSVDV ARYLQGVRPK AEKPPAIEPN IEHENDLVLI LGYGRVGQTI
ARFMKTEAVP FLVLDLDPTR VSEARKAGEP VYFGDVCNRS ILKQAKIREA KLIVLTFSNG
RILEEVLPLC RQLAPDSKIL VRTRDDTGME ELEAAGASQV IPETLEGSLM LVSQVLYQCG
VPLTRILKRL EYERRNHYQY LHGFFSGAET DFTLEHLHAV ALPKGANAVG LTLADIPWEK
LRVELRAVRR SGSEVESPEL DWKIRPGDTL IILGKPRRIE KAEHFLLQG
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