| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3133 |
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| Symbol | |
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| ID | 5611269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3781401 |
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| End bp | 3782648 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934071 |
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| Product | putative branched-chain amino acid ABC transporter |
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| Protein accession | YP_001474865 |
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| Protein GI | 157376265 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.401616 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.899973 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATAAAA AATTGATTAT CGCCTCTTCT ATCGCAAGCG GTGTGTTTGG CATCAGTAGT
CAGGCCAATG CCGAAGAGAC TATCTTCGTC GGTCATCTTG CCGATATGTC AGGCCCAACC
GCTTTCGTGG GTAAACCCTA TGCCGATGGT GTGAGAGACT CACTCGCCTA CATCAACTCC
CATGGAGGCA TAAGCGGGAC TAAGCTCGAA TATGAGACGA TAGATTATGC CTACAAGGTG
CCTCAGGCTA TCGCCTCATA TAAGAAGTGG CAGTCACGTA AGAATATGGT CGCGATGCAG
GGGTGGGGAA CCGCCGATAC CGAGGCACTT ATCTCCTTTG CCGCTAAAGA TCAGACGCCT
GTCTTCTCCG CCTCTTATTC GGGTCACCTG ACCGATCCTA AGGGGCTAAA TCCCAACACC
AAGAAACCTG CACCCTATAA CTTCTTCTAT GGGGCGTCCT ACTCCGACTC CTGTCGTGGT
CTGGTTCAGT GGGCCGCCAA AGACTGGCAG GCCAAAGGGG CCAAGGGCAA GCCAAAGTTT
ACCCATATTG GTGCTAATCA CCCCTTCCCG AATGCGCCTA AGGCGGCTTG TGCCGAGTAT
GCGACCGAGC TTGGATTTGA AGTACAGCCA GCCGTCGTTA TCTCCATGAA GCCCGGAGAC
TTTAAGGCGC AGTGCCTGAG CCTGAAAAGC TCGGGAACTA ACTATGGCTA TATCGGTAAC
TTAGGTGGCT CGGTACAGTC ACTGATTAAA TCCTGTAATA CGGTCGGCAC CGAGATCCAG
TTTATGTCCA ATATCTGGGG CGGTGACAAG CTGGTATTTA AAGCGGCAGG CGAGGGGATT
AAAGATTATA TCTTCCCGAC CATGACGCCA TTTTGGACCG ATGAAGTGCC GGGTATGAAG
CTGGTGCGTG AGATCTCGAA GATGTCTGAC AGCTCAGGCA GTGAAGAGCG TCTGCACCAT
TACATTCGCG GGGTCTGCTC AACCTTCTTC ATGAAAGAAT CGATGGAGTG GGCCAAGGCA
AACGGCGGTG TGACCGGTGA GAATGTTAAA AAAGGCATGT ATGCCCAGAA AAACTGGGTA
CCTAAGGGAC TCGAAGGAGT GTGTTTGGCA GCGACCTGGA CTCCGGAAGA TCACCGTGGC
ATCAACCAGG TGAATATCTA TAAGGGGAAT TTCAACGGCG GTGATATTCG CGTCGAGAAG
GCCGATCAGG TGACCCTCGA ACGTCGTGTT GACTGGTTAG GGTATTAA
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| Protein sequence | MYKKLIIASS IASGVFGISS QANAEETIFV GHLADMSGPT AFVGKPYADG VRDSLAYINS
HGGISGTKLE YETIDYAYKV PQAIASYKKW QSRKNMVAMQ GWGTADTEAL ISFAAKDQTP
VFSASYSGHL TDPKGLNPNT KKPAPYNFFY GASYSDSCRG LVQWAAKDWQ AKGAKGKPKF
THIGANHPFP NAPKAACAEY ATELGFEVQP AVVISMKPGD FKAQCLSLKS SGTNYGYIGN
LGGSVQSLIK SCNTVGTEIQ FMSNIWGGDK LVFKAAGEGI KDYIFPTMTP FWTDEVPGMK
LVREISKMSD SSGSEERLHH YIRGVCSTFF MKESMEWAKA NGGVTGENVK KGMYAQKNWV
PKGLEGVCLA ATWTPEDHRG INQVNIYKGN FNGGDIRVEK ADQVTLERRV DWLGY
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