Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3125 |
Symbol | xseA |
ID | 5611251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3772228 |
End bp | 3773556 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640934063 |
Product | exodeoxyribonuclease VII large subunit |
Protein accession | YP_001474857 |
Protein GI | 157376257 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1570] Exonuclease VII, large subunit |
TIGRFAM ID | [TIGR00237] exodeoxyribonuclease VII, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0284972 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATGC CAAAAAATAA CGTTTATACC GTATCCCGCC TGAATGGCGA AGTACGTCAA CTACTCGAAG GTGAATTGGG AAAAATTTGG CTCAATGCCG AAATTTCAAA CTTTGCCGCC CCCGGTTCTG GGCACTGGTA TCTGACACTC AAAGACAACT TTGCCCAGAT CCGTTCGGCC ATGTTCAAAG GCCGAAACCG CAGTGTCACC TTTAAGCCTG TCAATGGCCA GCAGGTATTG GTAAAAGGCT CGATTAGCGT CTACGAACCC AGAGGCGACT ACCAGCTCAT CATCGAGTCC ATGCTTCCCG CCGGAGATGG CCTGCTCGCG CAGCAATATG AAGCGCTCAA GATGAAGCTG GCCGCAGAAG GGCTCTTTGC GGCGGACACC AAGCGCCCAA TGCCAACAAA TATTCAAAAA ATTGGGGTTA TCACCTCCGC GACCGGCGCG GCAATAAAAG ATGTACTCCA TGTACTGGCA AGGCGAGACT CCAGTATCGA AGTCGTCATC TACCCGACTC AGGTCCAAGG CGATTCGGCC TCTAAAAGCA TCTGCAAGGC CATTCAAACC GCCAACGCAA GGCAGGAGGT CGATGTACTG CTACTGACCC GAGGTGGCGG TTCGCTGGAA GATCTCTGGT GTTTCAACAA TGAAGACCTT GCCCATGAGA TATACAACAG CGCCCTTCCC ATCGTCTCTG CGGTTGGTCA CGAAGTCGAT ACGACTATCA GTGACTATGT TGCCGATGTC AGAGCCCCAA CGCCGTCTGC TGGCGCTGAG CTCCTCTCCG GGGATGCCGA GAATAAATCC GAAAAGCTCG CCACCTTCAT CGCACGACTT AAACAGAGCT GGCAGCATTA CCAGTTGAAA ACCGAGCAGC GCAGCCGCTC GCTGGAAAAT AGACTCCACA GACAAGATCC TAAGCGAAAA CTGGAGCAGT TTCAGCAGAG CTTCGATGAG ATACAGATAC GCCTCAACGC CGCACTCAAC GACAAACTGC ACAAGTCGAC GCTGCAGCAG CAGAGTTTAA GTTACAGGCT TAATCAGCAG TCCCCACAGC ACAGGTTAAC GTTAGAGTCG AAGCACCTGG ATTATCTTAC GGCGCGCTTA AATGAGGGCA TAAAGGGGAA GCTCAACGAT GTCGAGATGA GCCTTAAAAA CAGCGCCCAT CAACTGGAAA CCGTCAGTCC GTTGGCCACT CTGAGTCGCG GTTACAGTAT CACCCAAGAT GAAAGCGGAA AGGTACTGCT GAGCTCCAAA GACACTCAGG CAGGCGATAC GATCACCACA CGACTTCTCG ATGGAGAGGT GAAATCGACA GTGATTTAG
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Protein sequence | MKMPKNNVYT VSRLNGEVRQ LLEGELGKIW LNAEISNFAA PGSGHWYLTL KDNFAQIRSA MFKGRNRSVT FKPVNGQQVL VKGSISVYEP RGDYQLIIES MLPAGDGLLA QQYEALKMKL AAEGLFAADT KRPMPTNIQK IGVITSATGA AIKDVLHVLA RRDSSIEVVI YPTQVQGDSA SKSICKAIQT ANARQEVDVL LLTRGGGSLE DLWCFNNEDL AHEIYNSALP IVSAVGHEVD TTISDYVADV RAPTPSAGAE LLSGDAENKS EKLATFIARL KQSWQHYQLK TEQRSRSLEN RLHRQDPKRK LEQFQQSFDE IQIRLNAALN DKLHKSTLQQ QSLSYRLNQQ SPQHRLTLES KHLDYLTARL NEGIKGKLND VEMSLKNSAH QLETVSPLAT LSRGYSITQD ESGKVLLSSK DTQAGDTITT RLLDGEVKST VI
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