Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3099 |
Symbol | |
ID | 5613073 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3736897 |
End bp | 3738060 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640934037 |
Product | putative NeuC |
Protein accession | YP_001474831 |
Protein GI | 157376231 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0381] UDP-N-acetylglucosamine 2-epimerase |
TIGRFAM ID | [TIGR00236] UDP-N-acetylglucosamine 2-epimerase [TIGR03568] UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTAGAA AAATAGCTGT GTTCACAGGA ACCCGAGCTG ACTACGGATT ACTGTATTGG CTAATCTCTG ACATTCAGGC CGCTGAGGAG CTGACTCTTC AACTTATCGT TTCGGGTAGT CACCTGTCAC CTGAGTTTGG TAATACGTTT GAAAAGATAG AGAAAGATGG ATTTCATATT GATGAAAAAA TTGAAATGTT ACTCTCCTCT AATTCGGCAA TTGGCACAGC CAAGAGTATG GGCTTAGGGG TCATTGGGTA TGCAGAGGCA CTCGATAGAC TAAGACCCGA TGTACTCGTC ATTTTGGGTG ATCGGTTTGA AGCGCTCTCA ATGGCACAAA CGGCAACCAT TATGGGCATT GCGATATTGC ATATCCACGG TGGTGAAATT ACCGAGGGCG CCTATGATGA TGCGATTAGA CATGCAATAA CGAAACTGAG TCTGGTTCAT TGCACATCTA CCGAGACATA TCGGCAACGT GTGATCCAGA TGGGTGAATC CCCTGACAGA GTTCACCATG TGGGCGCTAT AGGTCTGGAT CATATTCATC GTAGTAAGCT CATGACAAAA AAGGAGTTAT CTGAGTCATT AGGTTTTGAT TTAACGGCTC CCTATTTTTT AGTCACTTAT CATCCTGTCA CACTCGATGA TGAACCCGCT GAAGACACAT TTAATGCATT ATTGACGAGT CTGAACCAGT TTGGCTCTCA CCAGGTCATT ATCACTTACC CCAATGCAGA CAATGGTGGC AGAGGCATTA TTACCAGGCT TGAAGAGTAT GCAGGTAACT CTCAGGGAAG AGTGCTGGCC ATTCCCTCTC TGGGACAAGT CAGGTATTTA AGTGCGGTTA ACAATGCGAC AGCCGTTATA GGCAACTCTT CGAGTGGTAT TATTGAAGTC CCCTCATTTA ATGTGCCAAC AGTCAATATT GGTTGCCGGC AACAGGGGCG TCTTACCGCC GATAGTGTGA TCAACTGTCA GCCTGATACC GCTTCTATAA CCGAGGCGAT AACCCAGGCA ATTGATCAAT TGCCGGTGCT TCAACAGACC CCGGTCTCTA ACCCCTATGG CCAGGGCAAG GCCAGTCAAG CCATTATAAA AATTCTCACA GAAATGAGCC GTAAGCCGAT AAAATCATTT TACGATATTA AGGTTGAAAA CTAG
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Protein sequence | MPRKIAVFTG TRADYGLLYW LISDIQAAEE LTLQLIVSGS HLSPEFGNTF EKIEKDGFHI DEKIEMLLSS NSAIGTAKSM GLGVIGYAEA LDRLRPDVLV ILGDRFEALS MAQTATIMGI AILHIHGGEI TEGAYDDAIR HAITKLSLVH CTSTETYRQR VIQMGESPDR VHHVGAIGLD HIHRSKLMTK KELSESLGFD LTAPYFLVTY HPVTLDDEPA EDTFNALLTS LNQFGSHQVI ITYPNADNGG RGIITRLEEY AGNSQGRVLA IPSLGQVRYL SAVNNATAVI GNSSSGIIEV PSFNVPTVNI GCRQQGRLTA DSVINCQPDT ASITEAITQA IDQLPVLQQT PVSNPYGQGK ASQAIIKILT EMSRKPIKSF YDIKVEN
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