Gene Ssed_3098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3098 
Symbol 
ID5613072 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3735747 
End bp3736904 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content47% 
IMG OID640934036 
ProductUDP-bacillosamine synthetase 
Protein accessionYP_001474830 
Protein GI157376230 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCAT TAATAGAGTT TATTCGAGAA ACCTATCAAA CCAATGAGTT TATTCCTCTG 
CATGCCCCGA CATTCCCAGG CAATGAACAG GCGTATGTCG CGGAGACAAT AGCCAGTACC
TTTGTGTCGA GTGTTGGCAA GTTTGTCATC GATTTCGAAC ACAAGATTGA ATCTTTTACC
GGTTCACCTA AAGCGGTTGC CACTTCCAGT GGCTCCAGCG CCTTGCATAC CGCCTTGTAC
ATGGCAGGGG TAACAAGTGG GGATCTGGTT ATCACTCAAG CCCTCACTTT TGTGGCTACC
TGTAATACCT TATACCACAT GGGCGCAGCC CCAATTTTTG TCGACATTGC AAAAACAAGT
TTAGGCTTAT CTCCCCACGC CGTTCAAGCG TATCTGGAAG AATATGGGGT TATCGATGAG
CATGGCTTGT GTACCCACAA GGAGACGGGG CAAATTATTA GAGCCCTGCT GCCTATGCAT
ACTTTCGGTC ATCCAGTGGA GCTGGATGAA TTAGCCGTCA TTTGCCATCG ATGGAATCTG
GTTTTAATCG AAGATGCAGC CGAAAGCCTA GGGTCATTCT ATAAAGGAAA GCATACGGGC
ACGGTGGGAG ATTTCGCTGC ACTGAGTTTC AACGGCAACA AAATTATCAC CACAGGTGGT
GGCGGGATGT TACTTGCAAA TAGTCAAAGC AGTGGCGAGC GAGCCAAGCA TATAACAACG
ACCGCTAAGG TGCCCCACCC TTTTGAATTT TACCATGATG AACCAGGTTT TAACTACCGA
ATGCCAAACC TGAATGCTGC ACTTGGCTGT GCTCAGATGG AAAGCCTTCC CCTGTTTATC
GAACAGAAGC GAGCACTGGC AAAGCACTAT CAGACTTTCT TTAGCAATAG CGAGCTGCAG
TTTGTTCATG AGCCTAGTTA TGCCAAGTCT AACTATTGGC TTAATGCGGT CATTTGTCCC
GATACACAGA GTCGTGACAG ACTACTTAAG TCGACAAATG ATAATGGTGT GATGACACGA
CCAGTGTGGC AGCTCATGCA TCGCCTCCCT ATGTTTAAAG ATGCGGTGCG CGGCTCGTTA
ACAAACTCTG AATTAATCGA ATCTCGTCTT ATCAATCTAC CTAGCTCTCC AGCGACAATA
GGATTAACCC ATGCCTAG
 
Protein sequence
MKSLIEFIRE TYQTNEFIPL HAPTFPGNEQ AYVAETIAST FVSSVGKFVI DFEHKIESFT 
GSPKAVATSS GSSALHTALY MAGVTSGDLV ITQALTFVAT CNTLYHMGAA PIFVDIAKTS
LGLSPHAVQA YLEEYGVIDE HGLCTHKETG QIIRALLPMH TFGHPVELDE LAVICHRWNL
VLIEDAAESL GSFYKGKHTG TVGDFAALSF NGNKIITTGG GGMLLANSQS SGERAKHITT
TAKVPHPFEF YHDEPGFNYR MPNLNAALGC AQMESLPLFI EQKRALAKHY QTFFSNSELQ
FVHEPSYAKS NYWLNAVICP DTQSRDRLLK STNDNGVMTR PVWQLMHRLP MFKDAVRGSL
TNSELIESRL INLPSSPATI GLTHA