Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3089 |
Symbol | |
ID | 5611005 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3726110 |
End bp | 3727030 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640934026 |
Product | response regulator receiver modulated CheW protein |
Protein accession | YP_001474821 |
Protein GI | 157376221 |
COG category | [K] Transcription [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [COG0835] Chemotaxis signal transduction protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAAACA TTCTTGAATC AGTTAATAAA CGCACGCAGT TAGTCGGGCA AAACCGTTTA GAGCTTTTAT TATTTAAACT AAACGGTCGT CAAAGATTCG GTATCAACGT ATTTAAAGTC AAAGAGGTGT TGCAATGCCC GCCTCTTACA AGCTTGCCTA AGTTAAATAG TACTGTGAAA GGTGTGGCGC ATATTCGTGG TAACACTATC TCAGTCATAG ACTTGAGTGC TGCAACTGGT GGTCGTCCTA TCGAGAATAC CGAAGGTTGC TTCATCATTA TCGCGGAATA TAACCGCAGT GTGCAGGGTT TTTTGGTTAG CTCTGTGGAG CGGATCATCA ATATGAACTG GGAAGCCATT TTGCCACCGC CACAAGGTGC CGGCAGGTAT TCCTACTTAA CCGCTGTGAC AGAAATAGAG GGAGAGTTAG TCGAGATCCT CGATGTTGAA AAAATTCTCG ATGAGATATC TCCGGTTAAA ACCGAGATTA GTCAAGAGAC CGATGAAGCC ATAACCATCG ACCGGGAACA ACATTTCCAT ATTATGGTTA TTGATGACTC GGCTGTGGCT CGCAAGCAGA TCATCAGGGC ACTCTCGTCA TTGGGCTTAC AAATTGATAC GGCTATCGAT GGTCGGGATG CGCTCGATAA ACTCAATAAA ATCGCTGCAG AGATGGATAA TGTAGCGACT GAAATCCCAT TGATCATTTC AGATATTGAG ATGCCTGAAA TGGACGGCTA CACTTTAACT GCAGAGATAA GGGATAACCC TAAGTTAAAA GATATTAAAG TGGTATTGCA CACATCATTA AGCGGCGTAT TTAATCAAGC TATGGTTCAG AAAGTAGGAG CTAATGATTT TATTGCGAAA TTTAACCCAG ATGAACTTGC AGCAGCAGTG AACAAGCATT TGAGTCTATA A
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Protein sequence | MSNILESVNK RTQLVGQNRL ELLLFKLNGR QRFGINVFKV KEVLQCPPLT SLPKLNSTVK GVAHIRGNTI SVIDLSAATG GRPIENTEGC FIIIAEYNRS VQGFLVSSVE RIINMNWEAI LPPPQGAGRY SYLTAVTEIE GELVEILDVE KILDEISPVK TEISQETDEA ITIDREQHFH IMVIDDSAVA RKQIIRALSS LGLQIDTAID GRDALDKLNK IAAEMDNVAT EIPLIISDIE MPEMDGYTLT AEIRDNPKLK DIKVVLHTSL SGVFNQAMVQ KVGANDFIAK FNPDELAAAV NKHLSL
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