Gene Ssed_3076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3076 
Symbol 
ID5611645 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3712762 
End bp3713583 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content45% 
IMG OID640934013 
Productflagellin 
Protein accessionYP_001474808 
Protein GI157376208 
COG category[N] Cell motility 
COG ID[COG1344] Flagellin and related hook-associated proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTATTA CGGTAAATAC CAATGTGACT TCACTGAAGG CACAGAAAAA CCTGAATGTT 
TCTAGTGGTG CTTTGGCGAC TTCGATGGAG CGATTATCGA GTGGTCTGAG AATTAACAGC
GCTAAAGATG ATGCTGCAGG TCTGGCAATC TCAAACCGTC TTAATTCGCA AGTACGTGGT
CTTGAAGTGG GTATGCGTAA CGCTAACGAT GCTATCTCTA TCGCACAGAT CGCAGAAGGC
GCGATGCAAG AGCAGACAAA CATGCTGCAG CGTATGCGTG ATTTGACTAT TCAGGCGGAG
AACGGTGCTA ATAGTGTCGA TGATATTGCA GCGCTGAAAG CGGAAATGGA TCAGCTTGTC
ACTGAAATTG ACTTGATCGG TACGAGTACA GCGTTTGGTA ATACTAAACT ATTAACCGGA
GGCTTCTCTG CGGGGAAAAA CTTCCAGGTT GGTCATCAAG ATGGTGAAGA TATTAAAGTT
ACCGTCAAGA AAACAGATAA AGCATCACTA TCTGTGAACG CAGTCGTCAT TGCTACTTCA
GCTAACCGAG CTTCTGCCTT AGGTGCTATC GATAAAGCGA TTAAGACCAT CGATACCCAA
CGTGCTGATT TAGGTGCGAT TCAAAATCGT GTAGCTCATA ATATCAGTAA CAGTGCTAAC
ACTCAGGCTA ACGTCGCCGA TGCCAAGAGT CGTATTGTCG ATGTAGATTT CGCCAAAGAA
ACTGCCACAA TGACTAAAAA TCAGGTTCTT CAACAGACTG GCTCTACTAT GCTTGCTCAG
GCAAACCAAC TTCCTCAAGT TGCACTATCT TTACTCGGGT AA
 
Protein sequence
MAITVNTNVT SLKAQKNLNV SSGALATSME RLSSGLRINS AKDDAAGLAI SNRLNSQVRG 
LEVGMRNAND AISIAQIAEG AMQEQTNMLQ RMRDLTIQAE NGANSVDDIA ALKAEMDQLV
TEIDLIGTST AFGNTKLLTG GFSAGKNFQV GHQDGEDIKV TVKKTDKASL SVNAVVIATS
ANRASALGAI DKAIKTIDTQ RADLGAIQNR VAHNISNSAN TQANVADAKS RIVDVDFAKE
TATMTKNQVL QQTGSTMLAQ ANQLPQVALS LLG