| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3075 |
|---|
| Symbol | |
|---|
| ID | 5611644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3711699 |
|---|
| End bp | 3712517 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640934012 |
|---|
| Product | flagellin |
|---|
| Protein accession | YP_001474807 |
|---|
| Protein GI | 157376207 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1344] Flagellin and related hook-associated proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATTA CAGTAAATAC GAACGTCACA TCACTAAAGG CTCAGAAAAA CCTGAATACA
TCTAGTGGTA ATCTAGCTAC CTCAATGGAG CGTCTATCGA GTGGTTTGCG TATTAACAGC
GCAAAAGATG ATGCCGCCGG TCTTGCAATT TCTAACCGTT TGAACAGTCA GGTTCGAGGC
CTCGAAGTCG GTATGCGTAA CGCAAACGAC GCTATCTCTA TCGCTCAAAT TGCCGAAGGT
GCGATGCAAG AGCAGACAAA CATGCTGCAG CGTATGCGTG ACTTGACGGT TCAAGCCGAG
AACGGTGCAA ATAGCGCAGA TGATATTGCG GCACTTAAAG CGGAAATGGA TCAATTAGTC
AATGAGATTG ATGCAATTGG TACGACGACT GCGTTCGGTA ACACAAAGCT TATGACTGGT
ACCTTCTCAG CTGGTAAAAA TTTCCAGGTA GGTCATCAGG ACGGCGAAGA TATTAAAGTT
ACCGTCAAGA AAACAGATAA AGCATCACTA TCTGTGAACG CAGTAGTCAT TGCGACTTCA
GCTAACCGAG CCTCAGCTCT AGGCGCTATC GATAAAGCGA TTAAGACGAT TGATACCCAA
CGTGCTGATT TAGGTGCGAT TCAAAACCGT CTGTCTCACA ACATCAGTAA CAGTGCGAAC
ACTCAGGCTA ACGTAGCCGA TGCTAAGAGT CGTATCGTAG ATGTGGATTT CGCCAAAGAA
ACGTCTGCTA TGACTAAGAA CCAGGTACTA CAGCAAACAG GTTCAGCTAT GTTAGCTCAG
GCTAACCAGT TACCTCAAGT AGCACTTTCA TTACTATAA
|
|---|
| Protein sequence | MAITVNTNVT SLKAQKNLNT SSGNLATSME RLSSGLRINS AKDDAAGLAI SNRLNSQVRG
LEVGMRNAND AISIAQIAEG AMQEQTNMLQ RMRDLTVQAE NGANSADDIA ALKAEMDQLV
NEIDAIGTTT AFGNTKLMTG TFSAGKNFQV GHQDGEDIKV TVKKTDKASL SVNAVVIATS
ANRASALGAI DKAIKTIDTQ RADLGAIQNR LSHNISNSAN TQANVADAKS RIVDVDFAKE
TSAMTKNQVL QQTGSAMLAQ ANQLPQVALS LL
|
|---|
| |