| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2969 |
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| Symbol | |
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| ID | 5613746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3597371 |
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| End bp | 3598720 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640933909 |
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| Product | O-antigen and teichoic acid-like export protein |
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| Protein accession | YP_001474704 |
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| Protein GI | 157376104 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.369206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.787883 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAATA TGTGGGGGAA GGCGCTCAAG GTTTTTATAG GGACATCGGT ACTCCAGGTT
TCCTCTATAT TAAATTTTAT TGTGCTCGCT CGATTACTGA CATCTCAAGA GTTCGGTAAC
CTAAGACAGC TAATGTTACT CAACCAAGTG CTGTTTACGG TCTTATTTAC TGCAGTCCCC
ATATCGTTAC TCTATTTTTG TGGAATGTTT TCACAAGTTA ATGAAAAAAA AGAGGTTGCC
TACAAACATC TCGTTCTTAT TATTATATGT GGATTGGTTT GTTCTCTGGG CATTTTTACC
TTTAGAAGTG CCATAACAGA TATTTTTGCT AATAATGAAC TTTTTGAGTT GTTAGGCGTT
TTTTTTGTTT TTCCAGTGCT CTATATGCTT TACAACGCAG TTCCTACGTT CCTGATTGCA
CTAGATAGAA CACACCTAAT CAAATGGTAT TGTCCTGCGA TTGCATTTGT AAATACATTT
TTTGTATTGG CTGCAGCCTG GTTTGGTGAC TTTACAGATG TCTTTTATAC CATAATTTTA
TCAGCAGGAT TTTCAGCGGG TGTCGCGCTA TTGCTTCTTT CTGCTTTGAT CAAACAGAGC
CAACCTGGTG TAGCTGTTGA CCCCAAGAGG TTGTCATACA GGCAGATAAT TGGATACTCC
TGGTTTTTAG TCGCGGCAGC TTTGATCTCA ATTTTAGGCA GCAAAATAGA TCAATTTGTC
ATATCAAATA AGTTAGGCAT AGATGTGTTC GCTATCTATG TCGTTGGCGC TTTCCAAATT
CCAATTTATA GCATAATTCA ATCTAGTGTG AACTCGGTTA TGCTACCGCA AATTACAGCA
CATATTGCTA ATAATGAATG GAATGAGTTA CGGCTATTAT GGCGTGAATC AGTCAATAAA
ATCAGCCTGT TTGCTCTGCC TTTAGCCGCT GTTCTCACTG TGTTTTCATC TGAATTCATT
ACCCTGGTAT TTGGTGAACA ATATCGCTCA GCGTCTACCA TTTTTTTAAT TTTTTCATTA
CTAGCGCCAA TAAAGTGCAT CTCATTTGGG CTTATATTTC GGGCATCAGG TAAGCCACAA
TACGATGTGA TTGGTGCTTC TGTTTTCCTT ATCTTATCGA GTGTATTAAC TCTAGTTGGT
GTCAGCATTT GGGGCCCTGT AGGGGCTGCA GTCGGTGTGG TCTTGGCTAC ATTACTTTTA
GCGTGCATGA TGAGTCTGAT GGTTAAGGCA CACACTAAGG GGGAAATTGG GGTATTTGAT
CTTATTCCCA CTTTTTTCTT CTATCGATTT TTTGGCTTAC TATCTGCCTG TTGGATTTTT
AAAGCATTTG GGGAATGGGT TCTATCGTGA
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| Protein sequence | MNNMWGKALK VFIGTSVLQV SSILNFIVLA RLLTSQEFGN LRQLMLLNQV LFTVLFTAVP
ISLLYFCGMF SQVNEKKEVA YKHLVLIIIC GLVCSLGIFT FRSAITDIFA NNELFELLGV
FFVFPVLYML YNAVPTFLIA LDRTHLIKWY CPAIAFVNTF FVLAAAWFGD FTDVFYTIIL
SAGFSAGVAL LLLSALIKQS QPGVAVDPKR LSYRQIIGYS WFLVAAALIS ILGSKIDQFV
ISNKLGIDVF AIYVVGAFQI PIYSIIQSSV NSVMLPQITA HIANNEWNEL RLLWRESVNK
ISLFALPLAA VLTVFSSEFI TLVFGEQYRS ASTIFLIFSL LAPIKCISFG LIFRASGKPQ
YDVIGASVFL ILSSVLTLVG VSIWGPVGAA VGVVLATLLL ACMMSLMVKA HTKGEIGVFD
LIPTFFFYRF FGLLSACWIF KAFGEWVLS
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