| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2946 |
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| Symbol | |
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| ID | 5610684 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3566488 |
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| End bp | 3567807 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933886 |
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| Product | polysaccharide export protein |
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| Protein accession | YP_001474681 |
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| Protein GI | 157376081 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCTA ATTTTATTCA GCCATTTAAG GTAGACCTCC TACTAGTCAT TTTTAGCCTT
TGCTTTATGC TTTCAGGATG TGTCACTCCT ACGCTGACTC AAGAAAACGA TCTATGTCAT
CAGCCAGCCA ATGCAGTAAA CAAGAGTGCA GTAAACAACA GTGCAGTTAA AAACAGCACA
AAGGTAGAGG CTAAGCCTTG CCACTATTAC GATAGCTCCA CACCCTATGT GAGAAGAAGA
TGGCAAGATG ACTCGACAGT TCTCGTCAAT AAAATGGAGT CTGATCCCAC TTCAAACTCC
TTAGAAAACG AAGGGCCGGG TCTACAAACC GACTTAAAAG CGCAATTTAA CGTCTTAAAC
CTCTCCAGTG GCGACAGACT CAATATCGAG ATCTTAAACG GTGAGGAGTT TAGCAGTGAA
GTCGAGGTCA ACGCCGATGG CTTTATCTAC CTCCCCTTTA TTCCGGCAAT CAAGGCACGG
GGATTAAAGA TTGAATCATT GAAGGTCAGT ATCAGACAGT TATTGATCGA TGAGCAGTTA
ATGCTTGCCG GAGCCATCAG GATAAGCATT ACCCCGCTAA AATGGGCGCC GATCGAAGTC
AGCGTCTCAG GTGCGGTATT TGAACCCGGC ACTCACTTTA TCAACCATAA ATCAGACACC
GAGATCACCG ATGATAATGG CGGCCATACC GGAGATCAGG CTTCGGGGCG GAGTATCGCT
TCGGCCTTAA GATCATCGGG TGGGATCAGT CCGGACGCCG ATATCAAGGC CATTACAGTG
ACCCGTGGCG AGCAAACAAT CACCCTGGAT CTATCGGGAG TCATCTATGG TAGCTCGACT
CCTCACCTGA CGTTAATGGC TGGTGATCAT ATTCATGTAC CTCAGCTAAA TCAGTTTAAT
GATGAGCTGG CGAGACCTTC ACAAATTACG GCTCCGGGGA TCAGAGTATT TATCTCCAAC
CTGACTCAGC CCGCCAGCAG TAACTCACAA TCGGCAGTCG ATACTGAAGC CACCCGCTTT
CCCTACGGAA CTCGCCTGCT CAGCGGCGCC ATAGGTGCAA ACTGTATCGG GGGCGCGCAA
AGCACCAACG CGAGCCGACA CGTTATTTTG ATCACAAAAA ACCCGCTCAC CAAACAGATC
GATGTTGTCG AACGGTCACT GGATAACTTA ATGGTTCATT CGTGGAAGCC CAACATGAAC
CCTATCTTGC TGCCCGGCGA CGGTATCGCC TGTTACGACT CTGGGATCAC CAATATCCGG
GAGATTGCCA AAACTTTCAC CGAAATATTA CTGCCAGCAA CCTTACTCGG CCTACTTTAA
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| Protein sequence | MFSNFIQPFK VDLLLVIFSL CFMLSGCVTP TLTQENDLCH QPANAVNKSA VNNSAVKNST
KVEAKPCHYY DSSTPYVRRR WQDDSTVLVN KMESDPTSNS LENEGPGLQT DLKAQFNVLN
LSSGDRLNIE ILNGEEFSSE VEVNADGFIY LPFIPAIKAR GLKIESLKVS IRQLLIDEQL
MLAGAIRISI TPLKWAPIEV SVSGAVFEPG THFINHKSDT EITDDNGGHT GDQASGRSIA
SALRSSGGIS PDADIKAITV TRGEQTITLD LSGVIYGSST PHLTLMAGDH IHVPQLNQFN
DELARPSQIT APGIRVFISN LTQPASSNSQ SAVDTEATRF PYGTRLLSGA IGANCIGGAQ
STNASRHVIL ITKNPLTKQI DVVERSLDNL MVHSWKPNMN PILLPGDGIA CYDSGITNIR
EIAKTFTEIL LPATLLGLL
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