| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2941 |
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| Symbol | |
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| ID | 5610789 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3558416 |
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| End bp | 3561925 |
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| Gene Length | 3510 bp |
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| Protein Length | 1169 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933881 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001474676 |
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| Protein GI | 157376076 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.725686 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTTTTC GACTCAAAAC GGTACTCGGT ATCGCACTTA TCGAGGGCGT TTTATTGCTG
CTATTGGTTT ATACCAGTGT CGATTATTTA AGAAGCTCCA ACGAGGCTGA AATTGAGAAA
CGAGCCGACT CTATAGTGAC TCTTTTTGCC GCGGCGACCA AAGATGCGGT GATCAGCACC
GATGTTTCGA CTCTGCAAGT GTTAGCCAAT GAACTGCTGG TAAATACTCA AGTCCTGTAT
GTCAATATCT ATGATAAAAA CTCACTCTTA GTTCAGGTAG GTGAGATTCA ATCAGATGAA
TCGCAGAATA TCCAATCCAG CCGGGATCAA GGCTTATCTA GTGTCGATGA TGGTGTGTTA
GATGTCGAAG CCAATATCAT GGAGTCAGGT TATGTATTCG GGCGGATTGA ACTCGGTGTT
AGCGTGAATG AGTTTGATCA GTTTTTGGTG AGTGCGACAA CCCGATTTTT TTCCATTGCC
GGATTGGAGA TGCTGTTAGT TGCACTTTTT TCCTGGTTGT TAGGTCACTA TTTGACACGT
AATCTAAGTG AACTTAAAAC GGCTTCTAAA CGTATTTTAA GCGGTGAGAC TGGCATACAG
ATCCCAGTTA CAGCTACCGA TGAAATCGGT CAAACAACCC GTGCATTTAA CCGAATGATT
GAGAAGGTTG AGAAAAACAG AAGTGATCTT GAGAGTGCCA ATACCCGTTT AAGTACCATT
TTAGAGACGG CAGTCGACGG CTTTATTATT GTCGATACCT CTGGAGTTAT CACTCAGGTG
AACAGTGCGG TTTGTCGTCT GTTTGAGTAT GAGCTTGATG AGCTAATTGG TGAAAATGTT
TCGATTTTTA TGCCGACACA TGAACGGCAT ATGCATGATG GTTTCATGTC TCGGTTTATT
CAGTCCGCTC GTGATGCCAG AAAAGGAAGA GAACTTACTG CACAAAACAG GAGTGGCGAA
CAATTTCCAA TTGAGCTGTC TATCTCACGG ATGACCATCG AAAATGAAAC TATGTTATTG
GGGCTGGTAA AAGACCTGAG TGACATAAAG CGTAAGGAGG TGGCAGCGCT TCGCACCGAG
ACTATCTTGT TGGCAACGCT GGAAGCCAGT CAGGATGCGC TTATCACAAT TGATATCACG
GGAAGAATTC AAGAGTTTAA TGATGCTGCC TGTAAGTTAT TCGGGCATAA GCGTGAACAG
GCCTTAGGTG AGCTTCTCGA AGACTTGATT TTTGTCGATA TAGAGAAGAA AAACTTTAAA
CAGGGAATAC AGCTATTCAG GCAAACGGGT GAGGGGCCAG CCATTAAGAA AAGTATCGAG
ATGATGTCTG TCAAGCGTGA TGGCAGCTCA TTCCCTGTCG AGATGAAGAT GATCCCGGTA
CAGCTTGGCG AGGAGATCTT ACTGACCGCC TTTGTGCACG ATATTTCTAA GAGAATTGAA
TATGAAACTC AGTTAAAGCA GGCCAAAGAT CAAGCCGAGT CGGGCAGTAA GGCCAAGTCG
CGATTTCTGG CAACCATGAG TCATGAGATC CGCTCCCCTC TTAATGCGGT ATTGGGGAGT
GTCGAGCTTA TGTTGGACTC AAAATTGAAC AAAGAGCAAC GCATCTATGC CCATACAGCA
AAAGAGGCTG GAACCGCGCT ACTCAGCACC ATTAATGACA TTTTAGACTT TTCGAAAATT
GAAGCCGGAC AGATGATGTT GGAGAGTGTG AGTTTTTCAC CTGCCAAGAT AGTGGCTCAA
GTGTTGAGAA TATTAGCGCC TAATGCCCAT GAGAAGGGCA TTAATCTTGC GTGTTTTATC
AATCGAAATG TGCCTGAACT TGTCAAAGGA GATCCACAAC GTTTACGTCA GGTGATACAT
AACCTGGTTG ATAATGCGAT AAAGTTTTCT AGTGGAGGTT GTGTTTCGGT AGAGATGTGG
ATCCCCGATA GCCATCACGA AGAGGTGCAG TTGTATTGTG CCGTCACTGA TGAGGGCATT
GGGGTAAGCA TGGCGGCTCA AAAGAAACTG TTTAAAGAGT TCAGCCAGGT TCACGATCAA
CATAACACGA ACTACAAGGG TAGCGGGCTT GGCTTAGCTA TCTGCGCTGA GCTGATTGAG
ATGATGGGAG GGAAAATTGA ACTAAGCAGC CGATTGGGGC ATGGAAGCTG CTTTAGATTC
GATGTGTTGT TAAGGCTTGA GGAGCGACAA TTAACCTCTC TTACTCACTT GCCTGCGCAT
GCCAGAGTAC TATTGGTACA TCCCGATAAA ACCTTTTCTC ATCTGGTCAG AAAGCAGTAT
AGCCAGTATG GCGTGAGTAG CGTTAATGTC AGCCGGGTTA GCGATATCCT GAGTGCTAAA
GAGGTCAAGG GACGCTTTAA CTTTATCTTG ATCGATGACA CCGGTTTATC TGAGTTAAGT
TTAAAGCTAA TTAGCCTGTT GAAACGTGAC TTTCTATTTG AAGGGGGGGG AATCGCAGTG
CTAATTTCAG AGTTAAGGCC TGAAATGTCC GGCTTAGTGT CAGAGATAGG GCTGGAACAG
GTGATAAATA AGCCATTGAG CCGCGAGATG ATGCTAGGTT TACTAAGTGG CGATGACGTT
AACCATGAAC AGAAGCCTGA AGTGGAACTC TTACTTCCGG AGTTGACACC CAAGAACAGA
TTACTTCTTC TGGCCGAGGA TAGTCCATCG AATCAAATCG TTGCCGGGGC TATGCTAACC
AAATCTGGTT TCGAAGTTGA ATATGCAAAT AATGGGGTTG AGGCCGTTAA TATGGCAGCT
CAAAAGAATT ATGGTTTGAT ATTGATGGAT ATGCGAATGC CGGAGATGGA CGGCGTTGAA
GCTACTAAAA ATATTCTACT TCATCAACCT GATACCATTA TATTAGCCAT GACGGCCAAT
GTGCAGCCAG AGGATATTGA AAACTGCCTG TCGGCTGGGA TGAAAGATTT TGTGCCTAAG
CCCGTTAATA AGATTGATTT AGTGCGAGTT ATCAATAACT GGTTGCCGGA AATTCGTAGC
ACCGATAGTG ACATACTCGA AGGTACAGCT AAACTTAGCA TGGAAAGTTG TGAAGCTGAG
GAGCTCGAAT TACACTTGGA TAACGACGCT TCAAATGGAG TGGTGATGGA ACTTAAAACA
GAAAGTGATA AGTGTGATAA TGGCGCAAAC TCCGATGAGC TAAGCTTGGA GTCACTATTT
GATGAGTCTG TACTTGCTGA GCTCACCGAT GCGTTAGGTG TAGAGTCCAT GAAGGGGATG
TTTAGTGTCT ATCTTCAAGA AACTCACGAA AGATTGGATA CACTTAACGC TTTAATGCAG
ACGATGGATT TTACCGAAAT AGATAATCAG GCGCATACCT TAAAAAGCAG TTCCGGCAGT
TTTGGCGCTC AGGCTCTGTA TGAGGTTGCA AAAAGCCTTG AGAAGAGCGC CCGAGAGCAA
GATGAAAAAG ACGTTGAGTC ATATATGACA GAGGTTCAAC AAGTAGGGCA ACAAACTATT
AAGGCCTTCA AAGCACGTTT TGCAGCTTGA
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| Protein sequence | MSFRLKTVLG IALIEGVLLL LLVYTSVDYL RSSNEAEIEK RADSIVTLFA AATKDAVIST
DVSTLQVLAN ELLVNTQVLY VNIYDKNSLL VQVGEIQSDE SQNIQSSRDQ GLSSVDDGVL
DVEANIMESG YVFGRIELGV SVNEFDQFLV SATTRFFSIA GLEMLLVALF SWLLGHYLTR
NLSELKTASK RILSGETGIQ IPVTATDEIG QTTRAFNRMI EKVEKNRSDL ESANTRLSTI
LETAVDGFII VDTSGVITQV NSAVCRLFEY ELDELIGENV SIFMPTHERH MHDGFMSRFI
QSARDARKGR ELTAQNRSGE QFPIELSISR MTIENETMLL GLVKDLSDIK RKEVAALRTE
TILLATLEAS QDALITIDIT GRIQEFNDAA CKLFGHKREQ ALGELLEDLI FVDIEKKNFK
QGIQLFRQTG EGPAIKKSIE MMSVKRDGSS FPVEMKMIPV QLGEEILLTA FVHDISKRIE
YETQLKQAKD QAESGSKAKS RFLATMSHEI RSPLNAVLGS VELMLDSKLN KEQRIYAHTA
KEAGTALLST INDILDFSKI EAGQMMLESV SFSPAKIVAQ VLRILAPNAH EKGINLACFI
NRNVPELVKG DPQRLRQVIH NLVDNAIKFS SGGCVSVEMW IPDSHHEEVQ LYCAVTDEGI
GVSMAAQKKL FKEFSQVHDQ HNTNYKGSGL GLAICAELIE MMGGKIELSS RLGHGSCFRF
DVLLRLEERQ LTSLTHLPAH ARVLLVHPDK TFSHLVRKQY SQYGVSSVNV SRVSDILSAK
EVKGRFNFIL IDDTGLSELS LKLISLLKRD FLFEGGGIAV LISELRPEMS GLVSEIGLEQ
VINKPLSREM MLGLLSGDDV NHEQKPEVEL LLPELTPKNR LLLLAEDSPS NQIVAGAMLT
KSGFEVEYAN NGVEAVNMAA QKNYGLILMD MRMPEMDGVE ATKNILLHQP DTIILAMTAN
VQPEDIENCL SAGMKDFVPK PVNKIDLVRV INNWLPEIRS TDSDILEGTA KLSMESCEAE
ELELHLDNDA SNGVVMELKT ESDKCDNGAN SDELSLESLF DESVLAELTD ALGVESMKGM
FSVYLQETHE RLDTLNALMQ TMDFTEIDNQ AHTLKSSSGS FGAQALYEVA KSLEKSAREQ
DEKDVESYMT EVQQVGQQTI KAFKARFAA
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