| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2928 |
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| Symbol | |
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| ID | 5609860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3544948 |
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| End bp | 3546486 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933868 |
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| Product | transcriptional regulator, TyrR |
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| Protein accession | YP_001474663 |
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| Protein GI | 157376063 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.422498 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCTTG AAGTATGTTG CTTGGACCGT GTTGGTCTGG CGAAAGATAT TTTGATGGTC
TTGGAAGGTT ATGGCATTAA CTTGATTGCT ATCGATGCCA GTAATCAGGG GTTTCTCTAT
CTGCAATTTG CTGAGGTTAA TTTCGATACG CTCAGTGAAT TGTTGCCCTC GATCAGAAAG
GTTGAAGGCG TTCATGATGT CCGTACCGTC TCCTTTATGC CATCGGAGCA AGAGCACTAC
GCCTTGAAAA CACTTTTAAA AACACTGCCA GACTCGGTGT TTTCTATCGA TGTGAAAGGG
CGCGTTCGGA TCGTTAATGA GTCCGCTCTT ATGACCGTGG GCATGAGCGA GCATGAAATA
CTCGATGAGC CACTCAACCA TTGGGTTCAG GGCTTCAATT TCAGTCGTTG GCTAAGTGAA
ACCTTAGTGC TTGCCCAAGC GACGCGCGTC AACATAGGTC AAAATGAATA TTTGGCTGAG
ATGTTGCCTA TTTATCTCCC GGATGAGAGT GATAAATCCA TTCTTGCCGG CGCCGTCGTC
TCACTTAAAT CACCCGCCAG GGTCGGTAAG CAGTTTAACG CTTTACAGAG TCAAACAACG
GGCTTTGAAA GCGTACTGGC CACCAGTGAC AAGATGAAAG AAGTTCTGGT TCAGGCCAGG
CGCATGGCGC AACTCGATGC CCCTTTGCTT ATTACCGGTG AAACCGGAAC GGGGAAAGAG
CTGATGGCAC GAGCGTGTCA TGATGCCAGC ATGCGTAGAG AACACCCCTT CATTGCGATT
AATTGCGCCG CCTTACCAGA CAGCGCCGCA GAGGAGGAGC TCTTTGGCTT TGTTAGCAAC
GGAGAGATAG TCAAGAGGGG CTTCTTCGAG GAGGGCAAAG GCGGAACGGT TTTTCTCGAT
GAGATTGCCG AGATGTCAAA ATCTGCCCAG GTAAAGTTAC TGCGTTTACT GCAGGATGGC
ACCTTCAGAC GCTTGGGAGA GGATAGAGAG GTTAGGGCCG ATGTCAGGAT CATCTGTTCG
ACTCAGAAAA ACCTCGCCGA ACTGTGCCAA ACGGGAGAGT TCAGAGAAGA TCTCTACTAT
CGTATTCATG TATTGAGCTT CCATCTGCCA TCGCTTCGGG AACGAAAAGT CGATGTCATC
CCCTTAACCG AAATGTTTTT AGAACATTAC AGTCAACAAC TGTCGATCCC AATCAGACGT
ATTTCGGCCC AGTGTCGTGA ACATCTGCTC AACTATGCCT GGCCCGGTAA TGTCAGGCAG
CTTAAAAATG CCATCTTTCG GGCGGTATCC ATGTGGGATG GATCTGCCGA GTTATCTGTG
GAGCAGCTGA AGCTTCCCTC CTACGCCGAA GGATTCGGTT ATTTCGATCA CCAATTCGAA
GGAAGCTTAG ATCAAGCCAT GAAGCAGTTC GAATCGAGCC TGCTGAGAAG GCTGTATCCG
GCTTACCCAA GTACACGTCA GTTAGCCAAG AAGCTAGGCG TATCCCATAC GGCGATTGCC
AATAAATTGC GAGAATATAA GATCAGCAAG CAAAAATAG
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| Protein sequence | MRLEVCCLDR VGLAKDILMV LEGYGINLIA IDASNQGFLY LQFAEVNFDT LSELLPSIRK
VEGVHDVRTV SFMPSEQEHY ALKTLLKTLP DSVFSIDVKG RVRIVNESAL MTVGMSEHEI
LDEPLNHWVQ GFNFSRWLSE TLVLAQATRV NIGQNEYLAE MLPIYLPDES DKSILAGAVV
SLKSPARVGK QFNALQSQTT GFESVLATSD KMKEVLVQAR RMAQLDAPLL ITGETGTGKE
LMARACHDAS MRREHPFIAI NCAALPDSAA EEELFGFVSN GEIVKRGFFE EGKGGTVFLD
EIAEMSKSAQ VKLLRLLQDG TFRRLGEDRE VRADVRIICS TQKNLAELCQ TGEFREDLYY
RIHVLSFHLP SLRERKVDVI PLTEMFLEHY SQQLSIPIRR ISAQCREHLL NYAWPGNVRQ
LKNAIFRAVS MWDGSAELSV EQLKLPSYAE GFGYFDHQFE GSLDQAMKQF ESSLLRRLYP
AYPSTRQLAK KLGVSHTAIA NKLREYKISK QK
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