| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2926 |
|---|
| Symbol | |
|---|
| ID | 5613506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3542980 |
|---|
| End bp | 3543645 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640933866 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_001474661 |
|---|
| Protein GI | 157376061 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0625] Glutathione S-transferase |
|---|
| TIGRFAM ID | [TIGR01262] maleylacetoacetate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAGC TCTATGGATA TTGGCGTTCG AGTGCGGCCT ATCGGGTGAG AGTTGCCCTC
AACCATAAAG GGCTCGACGC CGAGCTTTTG TCTGTTCACT TAGTTAAAGA TGGCGGCGAA
CAACATAAAG CCGAATATGC CCAGTTAAAC CCTCAGGAGT TGGTGCCGGC GCTTATCGAT
AGTGATCCAA AGGGAGAGGA ACAGGAGGCT TTCGTGTTGT CTCAATCCCT TGCCATCATC
GAATACCTTG ATGAAAAGTA CCCCGAAAAT GCACTACTCC CTCAAGATCT TCATGACAAG
GCGATAGTTC GCGCTATGGC GATGTCTATA GCTTGCGAAG TGCACCCGCT AAACAACCTC
AAGGTACTGC AGTACCTATC GAAAGAGCTC GCTCTCGATG ATGAGGCTAA GTCGGCCTGG
TATCATCACT GGATAGATGA AGGCTTCAGT GCATTTGAAA AACAGTTGGT TAAATACTCG
GGTCGTTACT GCTTCGGTGA CAATATTACT CTGGCGGATC TGTGCTTGAT CCCCCAAGTG
TATAACGCCA ACCGCTTTAA CGTCGACCTG TCGCCATACC CTAATATTGT GCGCATTGTC
GAGAACTGTA ATCGACTCGA TGCGTTTATC GATGCCGCTC CTGAGAATCA GGCCGACGCC
GGCTAA
|
|---|
| Protein sequence | MLKLYGYWRS SAAYRVRVAL NHKGLDAELL SVHLVKDGGE QHKAEYAQLN PQELVPALID
SDPKGEEQEA FVLSQSLAII EYLDEKYPEN ALLPQDLHDK AIVRAMAMSI ACEVHPLNNL
KVLQYLSKEL ALDDEAKSAW YHHWIDEGFS AFEKQLVKYS GRYCFGDNIT LADLCLIPQV
YNANRFNVDL SPYPNIVRIV ENCNRLDAFI DAAPENQADA G
|
|---|
| |