| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2872 |
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| Symbol | |
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| ID | 5611786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3478214 |
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| End bp | 3478675 |
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| Gene Length | 462 bp |
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| Protein Length | 153 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933791 |
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| Product | BadM/Rrf2 family transcriptional regulator |
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| Protein accession | YP_001474607 |
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| Protein GI | 157376007 |
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| COG category | [K] Transcription |
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| COG ID | [COG1959] Predicted transcriptional regulator |
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| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator)
[TIGR02010] iron-sulfur cluster assembly transcription factor IscR |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.675644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000182952 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAACTTA CATCGAAAGG TCGTTATGCT GTGACAGCCA TGTTAGATGT TGCTATGCAT
TCTACATCAG GTCCAGTGCC ATTGGCCGAT ATTTCTGAGC GCCAAGGGAT CTCTCTTTCT
TATCTTGAAC AACTTTTCGC AAAACTGAGA AAGCATGGAC TGGTTTCAAG TGTTAGGGGC
CCGGGTGGTG GTTACCGTCT AGGTGCTGAT GCCGGGGAAA TTTCAGTTGG TATGGTCGTA
CGTGCAGTCG ATGAATCCGT CGATGCAACA CGTTGTCAGG GACAAGGTAA CTGTCAAAGT
GGTACGCGCT GTCTGACTCA CTCCTTGTGG GGTGATTTGA GTAAACAAAT TTCTGATTTC
TTAAATGGGA TCAGTCTTGC TGGCTTAATG AATAAACGTG ACGTTCAGTT TATTTCAGTT
AAGCAAGATG AATTGCAACA GGAACAAAGA GTAACGGTAT AA
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| Protein sequence | MKLTSKGRYA VTAMLDVAMH STSGPVPLAD ISERQGISLS YLEQLFAKLR KHGLVSSVRG
PGGGYRLGAD AGEISVGMVV RAVDESVDAT RCQGQGNCQS GTRCLTHSLW GDLSKQISDF
LNGISLAGLM NKRDVQFISV KQDELQQEQR VTV
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