Gene Ssed_2872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2872 
Symbol 
ID5611786 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3478214 
End bp3478675 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content44% 
IMG OID640933791 
ProductBadM/Rrf2 family transcriptional regulator 
Protein accessionYP_001474607 
Protein GI157376007 
COG category[K] Transcription 
COG ID[COG1959] Predicted transcriptional regulator 
TIGRFAM ID[TIGR02010] iron-sulfur cluster assembly transcription factor IscR
[TIGR00738] rrf2 family protein (putative transcriptional regulator) 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.675644 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.82952e-08 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACTTA CATCGAAAGG TCGTTATGCT GTGACAGCCA TGTTAGATGT TGCTATGCAT 
TCTACATCAG GTCCAGTGCC ATTGGCCGAT ATTTCTGAGC GCCAAGGGAT CTCTCTTTCT
TATCTTGAAC AACTTTTCGC AAAACTGAGA AAGCATGGAC TGGTTTCAAG TGTTAGGGGC
CCGGGTGGTG GTTACCGTCT AGGTGCTGAT GCCGGGGAAA TTTCAGTTGG TATGGTCGTA
CGTGCAGTCG ATGAATCCGT CGATGCAACA CGTTGTCAGG GACAAGGTAA CTGTCAAAGT
GGTACGCGCT GTCTGACTCA CTCCTTGTGG GGTGATTTGA GTAAACAAAT TTCTGATTTC
TTAAATGGGA TCAGTCTTGC TGGCTTAATG AATAAACGTG ACGTTCAGTT TATTTCAGTT
AAGCAAGATG AATTGCAACA GGAACAAAGA GTAACGGTAT AA
 
Protein sequence
MKLTSKGRYA VTAMLDVAMH STSGPVPLAD ISERQGISLS YLEQLFAKLR KHGLVSSVRG 
PGGGYRLGAD AGEISVGMVV RAVDESVDAT RCQGQGNCQS GTRCLTHSLW GDLSKQISDF
LNGISLAGLM NKRDVQFISV KQDELQQEQR VTV