| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2871 |
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| Symbol | |
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| ID | 5611785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3476924 |
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| End bp | 3478138 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933790 |
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| Product | cysteine desulfurase |
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| Protein accession | YP_001474606 |
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| Protein GI | 157376006 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
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| TIGRFAM ID | [TIGR02006] cysteine desulfurase IscS
[TIGR03402] cysteine desulfurase NifS |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000000328828 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCTTC CTATCTATTT AGATTATGCT GCGACAACGC CGGTTGATCC TCGTGTTGCA
GAAAAAATGA TGCAGTGCAT GACTATGGAC GGCATATTTG GTAACCCTGC GTCTCGTTCT
CACCGTTATG GTTGGCAGGC TGAAGAGGCG GTTGATATCG CCCGTAATCA AGTTGCTGAG
TTAATCAATG CAGACCCGCG AGAGATCGTA TTTACATCGG GTGCAACTGA ATCTGACAAC
TTGGCAATTA AGGGTGTTGC TCATTTCTAC CATAAGAAAG GCAAGCACAT CATCACCAGC
AAGACTGAAC ATAAAGCGGT ACTCGATACT TGTCGCCAGC TTGAGCGTGA AGGGTTCGAA
GTGACCTATC TTGCACCTGA GTCTAATGGC CTGATCCCAC TTGAAACGAT CGAAGCTGCG
ATGCGTGAAG ATACGATTCT TGTCAGTATC ATGCACGTAA ACAACGAGAT CGGTGTTATC
CATGATATTT CTGCTATCGG CGAGCTATGT CGTAGCAAGA AAATCATTTT CCATGTAGAC
GCTGCCCAGA GTGCTGGTAA GTTGCCTATC GACGTTCAGT CGATGAAAGT CGATCTGATC
TCTATCTCTG CTCACAAGAT GTATGGCCCT AAAGGTATCG GAGCACTCTA TGTGCGTCGT
AAGCCACGCA TTCGTCTTGA AGCGACTATG CACGGTGGTG GTCATGAGCG TGGTATGCGA
AGTGGTACCC TTGCGACTCA CCAAATTGTT GGTATGGGTG AAGCGGCTGC GATAGCAAAA
GCTGATATGA CAACAGATAA TGCGCGTATC AGAACCTTGC GTGACAGACT TTGGAATGGC
GTGAAAGGAA TTGAAGAAAC CTACATTAAT GGTGACTTCG AACAGAGCTA TTGCGGTAGC
TTAAATGTCA GCTTTAACTT CGTCGAAGGT GAGTCATTGA TGATGGCGCT TAAAGACCTC
GCAGTCTCCT CCGGCTCGGC ATGTACATCG GCAAGCTTAG AACCAAGCTA TGTGCTAAGA
GCGCTTGGTT TGAATGACGA AATGGCGCAT AGCTCAATTC GTTTCTCTAT CGGTCGCTTT
ACGACTGAAG AGGAGATCGA TCATGCAATT GAGACTATTA ACAAGTCAAT TGGCGACTTA
CGGGAGATGT CTCCACTGTG GGAGATGTTT CAAGATGGTG TAGATCTGGA CAAGGTTCAG
TGGGCTCACC ATTAA
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| Protein sequence | MKLPIYLDYA ATTPVDPRVA EKMMQCMTMD GIFGNPASRS HRYGWQAEEA VDIARNQVAE
LINADPREIV FTSGATESDN LAIKGVAHFY HKKGKHIITS KTEHKAVLDT CRQLEREGFE
VTYLAPESNG LIPLETIEAA MREDTILVSI MHVNNEIGVI HDISAIGELC RSKKIIFHVD
AAQSAGKLPI DVQSMKVDLI SISAHKMYGP KGIGALYVRR KPRIRLEATM HGGGHERGMR
SGTLATHQIV GMGEAAAIAK ADMTTDNARI RTLRDRLWNG VKGIEETYIN GDFEQSYCGS
LNVSFNFVEG ESLMMALKDL AVSSGSACTS ASLEPSYVLR ALGLNDEMAH SSIRFSIGRF
TTEEEIDHAI ETINKSIGDL REMSPLWEMF QDGVDLDKVQ WAHH
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