| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2869 |
|---|
| Symbol | |
|---|
| ID | 5610583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3476166 |
|---|
| End bp | 3476489 |
|---|
| Gene Length | 324 bp |
|---|
| Protein Length | 107 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640933788 |
|---|
| Product | iron-sulfur cluster assembly protein IscA |
|---|
| Protein accession | YP_001474604 |
|---|
| Protein GI | 157376004 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0316] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00049] Iron-sulfur cluster assembly accessory protein
[TIGR02011] iron-sulfur cluster assembly protein IscA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.586009 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000000184682 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATAA CAATGACTCC CGCGGCAGCA GAACGTGTAA AAAGCTTTCT TGTGAGTCGC
GGCAAGGGGA TAGGCTTACG CTTAGGACTC AAAACATCGG GTTGCTCTGG TATGGCATAC
ATCCTCGAGT TTGTTGATGA TTTGAATGAT GATGATGAAG TTTATGAAAT CGGTGATGTA
AAAATTATTA TCGATGCCAA AAGCTTCATC TATCTTCAAG GTATAGAGCT CGACTTCGTA
AAAGAGGGGC TCAATGAAGG ATTTCAGTTT AACAACCCTA ATGCTAAAGG GGAGTGTGGC
TGTGGTGAGA GTTTCACAGT CTAA
|
|---|
| Protein sequence | MAITMTPAAA ERVKSFLVSR GKGIGLRLGL KTSGCSGMAY ILEFVDDLND DDEVYEIGDV
KIIIDAKSFI YLQGIELDFV KEGLNEGFQF NNPNAKGECG CGESFTV
|
|---|
| |