Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2861 |
Symbol | |
ID | 5611623 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3460303 |
End bp | 3462924 |
Gene Length | 2622 bp |
Protein Length | 873 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933780 |
Product | TonB-dependent receptor |
Protein accession | YP_001474596 |
Protein GI | 157375996 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.318133 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000966582 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACTCTT TGACCTTAAC AGCAAAAGCC GTACGCACGA GTTTAATCGC TGCAGCTGCA ACCAGTGTTG CTTTCTCAGG ATTTGCGTTT GCTGAGGAGC AGAGCGATGG CGCTAAAGTT GAAAGAATTG AAGTAACAGG TTCTCGAATC CAAAGAACGG ATATGGAAAC GGCAAGTCCG GTTACTGTAA TCGATGCCAG CGCAATTAAA GCGGCCGGTG CAACTTCAAT CGATGAAGTC CTGCAAAAGA TGACCGCCAC TGGCGGCGCG ATGACTAATC CTGGTATCAA TAACGGCTCT CAAGGTAATG CCTCTATCAA TTTAAGGGGT TTAGGTTCTC AGCGAACCTT AGTATTAGTC AACAACCGCC GTATGGTTAA TTCAGGTACC GGTGCGGCTT CTACAGTCGA TTTGAATACT ATTCCCGTAT CTATGATTAA ACGTATCGAA GTACTGAAAG ATGGTGCTTC ATCTGTATAT GGGTCCGATG CTGTAGCTGG TGTTGTGAAC ATCATCCTTA AAGATGACTT CGAAGGTTTA GAGGCTAATG TGCAAACAGG TGTTTCCGGT CAGGGAGACG CAAGTGAAAC CAGCTTCGAC CTAACCATGG GGGGAAGCTT TGATCGCGGA AATGTCGTTA TGGGCCTGCA GTACATGGAC CGTGGCGAAG CGAGCATGGC TGACCGCGAT GCCACACAGT GTGACTATGC CGAGCGTGTC GGTGCCGATG GTAATTTAGA GCTGTATTGT GGCGGTAGTT CATATACCCC AGGTGGTCAT ATTTGGGGAC CTGATGGACG TGATTCTTTA CAAGGTAGTC TTGATGGAAC TTGGCATGAA TTTACCGACG ATGATAAGTA TAATTACAAT GCGTCGAGTT ACTTATATAC ACCAATGCAG CGTCTTAACC TGACTGCATT AGGTAACTTT GAACTTACTG ATTCGATTAA TCTGTTCAGT GAAGCTATGT ACTCTAAGCG CTGGTCTGAA CAGCAGATGG CACCTCAGCC GATATGGACT GACACATTTA CATATACAGA GGCCATGGGA GATAGCCTAT TAGAGCACGG CTACGAATAT GGTGACGAAT TGGACTATGG TCGTCGTATG GCCGATGTCG GAAATCGTGA GTTTTCTCAG GTTGTAGACA CGGTTCGAGT AGTCGTTGGA CTGGACGGCT TGTTGGATAA TGGTTGGGCA TGGGATACCT CTGTTAACTA CGGGCGAAAT GATTCGGTAG ACCGTCTGGC AAACCTTATC AATATGGGCT CTGTTAATAC AGGTATTGAA GAGGGGACGT TTAATCCACT GGATCAAGCT TCCTGGTCGC AAGAAAATAT GAATGAGTAT CTGTATACCG AGCTAAATTC CGGTGGTAGT GAGATGTTTA TCGTATCTGC TAACCTTTCT GGCGAGGCCT TAGAGTTACC TGCTGGCTAT CTGGGGTTCG CAACCGGACT AGAGCGTAGA ACAGAAAAAG CCTGGTTTAT CCCTGACTCT TTAACATCTC AAGGTATGGC TAATGACCCC AAGGTCGAGC CAACAGGTGG AGAGTATGAT GTTACTGAAG CATATTTAGA GTTAGCGATT CCATTATTGT CAGGCGTATT TTTAGCCGAG CAAGTTGATT TGAGTGCCGC AGTTAGATAT TTTGATTACA GTACTTTTGG CAGTGATAGC ACCTGGAAGC TGGGTTTGAC TTGGCGCATG ACTGATGACT TTATGCTTCG TAGTGTAGCT TCAACGGCAT TTAGAGCACC GTCAGTCGAT GAGTTATACT CAGGTAAGTC CCCGTCGTTC GATCAGGTGG AGCATCCAGT CGGTCAAGAT CAAGCGGAAG TGACACGCGG TGGTAACCCA AATCTGACAC CTGAAGAAGC TGAAACCTTT ACTGCAGGTT TTGTCTATTC ACCTTCATGG TTTGATGGTT TCTCGGTAAC AGCAGATTAC TATGATATCT CGATAACCAA CTCAATTGCC TTGGTTGATT CGCAGTACAT TGTTGACCAG TGTATGGATG CACAGGGTAA CCCAATTAAT ACAGAAACAA GTCTGTGTCA GTCTGCCGAT ATCAAGATGG GCGGTGGTAA TCGCATCATA TTTAACAACC AGCTACAGAA CATTGGTGCT GAAAACACTT CAGGTATCGA CATTAATTTA GCTTATGCCT TCGATGCTGT TGGACTTGCA TGGACAACAA GTTTAGATTC GACTATTTTG CTCGAGAACG AATCTATTAT CTTAGGTGAG TCAATAGATT ATGCGGGCCT TATCACGTCA GGTAGTGGCG GTTTTGCCAA GTATAAAACT AATTTTGACT TAGGTGTGGA AGGGGATAGT TGGGGAGCAC ACTATCAGGC ACGATATATC TCCGGAATGG ATAGTTATGC GTGTCAAAGT GAGCCATCTT CTTGTTATGC ACCATCGACA GATAGCATTA TCTATCACGA TGTTTCAGCT ACTTACTTCC TTCCTCAAGG ATGGACGCTG TCAGCTGGCG TAAATAACTT ACTCGACGAA GAGGCACCAT ATTACACAGG TAATAACGAT GCCAACACAG ATCCCTACAC TTATGATACG TTAGGACGTT ACTTCTACTT GCAAGCGAGT GTAAAATTAT AA
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Protein sequence | MNSLTLTAKA VRTSLIAAAA TSVAFSGFAF AEEQSDGAKV ERIEVTGSRI QRTDMETASP VTVIDASAIK AAGATSIDEV LQKMTATGGA MTNPGINNGS QGNASINLRG LGSQRTLVLV NNRRMVNSGT GAASTVDLNT IPVSMIKRIE VLKDGASSVY GSDAVAGVVN IILKDDFEGL EANVQTGVSG QGDASETSFD LTMGGSFDRG NVVMGLQYMD RGEASMADRD ATQCDYAERV GADGNLELYC GGSSYTPGGH IWGPDGRDSL QGSLDGTWHE FTDDDKYNYN ASSYLYTPMQ RLNLTALGNF ELTDSINLFS EAMYSKRWSE QQMAPQPIWT DTFTYTEAMG DSLLEHGYEY GDELDYGRRM ADVGNREFSQ VVDTVRVVVG LDGLLDNGWA WDTSVNYGRN DSVDRLANLI NMGSVNTGIE EGTFNPLDQA SWSQENMNEY LYTELNSGGS EMFIVSANLS GEALELPAGY LGFATGLERR TEKAWFIPDS LTSQGMANDP KVEPTGGEYD VTEAYLELAI PLLSGVFLAE QVDLSAAVRY FDYSTFGSDS TWKLGLTWRM TDDFMLRSVA STAFRAPSVD ELYSGKSPSF DQVEHPVGQD QAEVTRGGNP NLTPEEAETF TAGFVYSPSW FDGFSVTADY YDISITNSIA LVDSQYIVDQ CMDAQGNPIN TETSLCQSAD IKMGGGNRII FNNQLQNIGA ENTSGIDINL AYAFDAVGLA WTTSLDSTIL LENESIILGE SIDYAGLITS GSGGFAKYKT NFDLGVEGDS WGAHYQARYI SGMDSYACQS EPSSCYAPST DSIIYHDVSA TYFLPQGWTL SAGVNNLLDE EAPYYTGNND ANTDPYTYDT LGRYFYLQAS VKL
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