| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2852 |
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| Symbol | |
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| ID | 5612927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3450779 |
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| End bp | 3453646 |
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| Gene Length | 2868 bp |
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| Protein Length | 955 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933771 |
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| Product | DNA-directed DNA polymerase |
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| Protein accession | YP_001474587 |
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| Protein GI | 157375987 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
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| TIGRFAM ID | [TIGR00678] DNA polymerase III, delta' subunit
[TIGR02397] DNA polymerase III, subunit gamma and tau |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00013426 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000946714 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCATATC AGGTGTTGGC CAGAAAATGG CGCCCTGCTA CATTCGAGCA AATGGTTGGC
CAGTCGCATG TTTTGCATGC TTTAACCAAT GCTCTTTCTC AGCAAAGATT ACATCATGCC
TATCTCTTCT CCGGTACCCG TGGTGTAGGC AAAACAAGTT TAGCCCGTCT GTTTGCGAAA
GGACTGAATT GTGAGAAGGG AGTTACCGCT TCTCCATGTG GTCAATGTTC CAGTTGTATC
GAGATCTCTG AGGGGCGTTT TGTCGACCTC ATTGAGGTTG ATGCGGCCTC GAGAACCAAA
GTCGATGATA CACGTGAACT ATTAGATAAC GTTCAGTACC GACCCAGTCG AGGACGTTAC
AAGGTTTATC TTATCGATGA AGTTCACATG CTCTCCAGAA GCAGTTTTAA TGCCCTGTTA
AAGACGCTTG AAGAACCTCC CGAGCATGTT AAGTTCCTGC TGGCTACCAC TGATCCACAA
CGACTTCCGG TCACCGTGTT GTCTCGCTGT CTGCAATTTA ACTTAAAGAG CTTAACGCTG
GAAGAGATAG AACAGCAGTT AACTCATGTG CTTTCTCAAG AGCAATTGAG CTTTGAACCA
CAAGCACTGA AATTATTAGC AAAATCTGCC AATGGCAGTA TGCGTGATGC ACTTAGCCTG
ACCGATCAGG CGATTGCCTT TGGTGCGGGC CAAGTCATGC TTACTCAAGT ACAAACCATG
TTGGGTAGCA TCGATGAGCA TCACGTTATT ACCTTGCTTA ATGCTTTGAT TCAAGGTGAT
ATTGAAAATC TGATGCAGGT AACTGCTAAG GTTCTCTCCT TTGGGGCTGA TCCACAGGAA
GTGCTTCGAA GTTTACTTGA GCTGTTACAC CAAATTACGC TAAGCCAGTT TGCGCCGGCC
GCGGCTCAAC TGTCAATTTA CAGTGAACAG ATCACCGCAT TTGCCGAGCA GATAAGTCCC
GAGCAGATCC AACTCTATTA TCAACTGTTA CTGACCGGGC GCAAAGATCT TCCCCATGCG
CCAGATCCAA AATCCGGACT CGAGATGGCC TTGCTAAGAG CCGTGACCTT TGTACCGGAA
GTGCCGGTCA AGCGATGGTC GGTAGCAGAA CCGGCGACCA TCACTGTACC TGAAGTGAAG
TCTGTATCTC AGCTGGAACG GGATAATGTT AATTCGAACG CTCACCCTCC AAAAGAGCAG
TCTTCAGTAG CTGGCTCTTC AGCAGATCAG TCTTTGGTAG ATAGCTCATC AAACAGTGGC
TCTTCAGAAG ATAGTCCGGC AGCATCGCAG GAGTCTAGCG ATGATGATTC AGACTTACTC
AACAGCTTAA ACAGTGAGCA AGCCCTGATA TTGAGCCAGG CTTCTAGTCA GGGAATGGAG
CAGGGCGCAG CGGTAGAGTC ACCGGTCGAA GCCGTTGCAG TGCAAGGTGT AGCGTCAGAA
GTGCCTAAGA TTGTTGAAAC ACAATTTGTT AAGGCTGAGC CTGTTGAGAC AGAAGCTGCT
GTAAACGATG CTCCTGCGGT CGAGACTCTT GTGGTTGATC CTGGCGCAAA TATAGAGCGC
AAAGACGAAG AGCCGCAGTC TCAGCAGCTT AAGCCCTCAG TTACAGACAA GCAATCAGAT
GATACCAGGC AAACAGAGGC TCAGGTGACA CCGGAAAGTG TGACAGAGCA AAGCATACCA
GAGTTAAGTG TATCGTCGCC GAACTCTATG CCCGACGAAT ATTACGCCGC GCAAGATGCT
CAATTTGATG CACAAACTGA CGCCTATGAT GATCATCCAC AGCAGATGGA TGAATATCTT
CCTTTCGACT CTTTAGCACA GGGAAACCCC GGAGCAAGCG ACAGTGAGCT AAATCAGGGG
AATAGCGCTG CCGTTACATC ACCCGCACCG GACGTTGCTG AAGATGATAT TTTAGATGCC
GTCCTGGCCG CCCGGGACTC ATTGTTAACA GAATTGGTTG AGAGTGAACC TAAGGAGAGT
GGTGGAAAAA AGCCTGAAGC GGAACGCCAG AGCTTTGTGC CACCGTCTCG AAAACCAGCT
CTTAGTGAGT CCGAGTCCAA TGCTGTCGAT GAGGGCGTAC ATGAACTGGG TGACCAAGTG
GAAACTCAGG AGCATGAGGG AGCCGATAGT CAGATTGAAG ACAGGCCTCC ATGGGAGGAG
CAAGAATCGT CAGTTTCATT GAGTGGTGAG TCATCAAAGG CTGCCGAGGA GATGCTTGAT
ACATCGGTTC ATGATGCCGT TAAGGGTGAG GAGAGTCACG TAGAGCAAGT CGCGGGGGCT
CACAGCCAAA CTCAAGCTCA GGCTCAAAGT CATGCATCGA CGGCGGTCTT AAATCACAGT
GAGTCATCAG TTAGTGCCGA GCAGATCCCC GCTAAAGTGG TTGTATCAGG TAGTGGTGAA
ATCACCGGCC ACGATATCGA CCTTAAATGG TATCGTTTGA TGTCGGCACT GGATGTGGGC
GGAAGGGTCA GGCAACTCGC GGTCAATTCC GTTTGCCATG AGTTTATTGC TCCCATGTCA
TTGCTATTGA AGCCCAATCA AAAGCATTTA GCTGCTGATG TCGCCATAGT TCAGTTAGAA
GAAGCCTTAA GCCGTGCACT CGGAAACGAA ACCAAGGTGG CGATTGAAGT GGGTGTCGAT
GATGTGCGTG AGACACCATT AGAGATACGT CAGCGTTTTC ACAGAGAGCT GCTTGCCGAG
GCCCAACAAG GCTTGATGAG TGATAGCAAT ATCCAATGGC TGATGAGTCA GATGGAGGCT
GAATTTGAAA ATGATAGTTT AAGTTACAAC CCCGAATTGT TGAGTTTAAA AGGAAATACC
ATTGAGCTTA TCGATAAGTC GAACTTTAAG ACGCTAACTC AGTCATAA
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| Protein sequence | MSYQVLARKW RPATFEQMVG QSHVLHALTN ALSQQRLHHA YLFSGTRGVG KTSLARLFAK
GLNCEKGVTA SPCGQCSSCI EISEGRFVDL IEVDAASRTK VDDTRELLDN VQYRPSRGRY
KVYLIDEVHM LSRSSFNALL KTLEEPPEHV KFLLATTDPQ RLPVTVLSRC LQFNLKSLTL
EEIEQQLTHV LSQEQLSFEP QALKLLAKSA NGSMRDALSL TDQAIAFGAG QVMLTQVQTM
LGSIDEHHVI TLLNALIQGD IENLMQVTAK VLSFGADPQE VLRSLLELLH QITLSQFAPA
AAQLSIYSEQ ITAFAEQISP EQIQLYYQLL LTGRKDLPHA PDPKSGLEMA LLRAVTFVPE
VPVKRWSVAE PATITVPEVK SVSQLERDNV NSNAHPPKEQ SSVAGSSADQ SLVDSSSNSG
SSEDSPAASQ ESSDDDSDLL NSLNSEQALI LSQASSQGME QGAAVESPVE AVAVQGVASE
VPKIVETQFV KAEPVETEAA VNDAPAVETL VVDPGANIER KDEEPQSQQL KPSVTDKQSD
DTRQTEAQVT PESVTEQSIP ELSVSSPNSM PDEYYAAQDA QFDAQTDAYD DHPQQMDEYL
PFDSLAQGNP GASDSELNQG NSAAVTSPAP DVAEDDILDA VLAARDSLLT ELVESEPKES
GGKKPEAERQ SFVPPSRKPA LSESESNAVD EGVHELGDQV ETQEHEGADS QIEDRPPWEE
QESSVSLSGE SSKAAEEMLD TSVHDAVKGE ESHVEQVAGA HSQTQAQAQS HASTAVLNHS
ESSVSAEQIP AKVVVSGSGE ITGHDIDLKW YRLMSALDVG GRVRQLAVNS VCHEFIAPMS
LLLKPNQKHL AADVAIVQLE EALSRALGNE TKVAIEVGVD DVRETPLEIR QRFHRELLAE
AQQGLMSDSN IQWLMSQMEA EFENDSLSYN PELLSLKGNT IELIDKSNFK TLTQS
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