Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2838 |
Symbol | |
ID | 5613180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3430588 |
End bp | 3431964 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640933757 |
Product | L-serine ammonia-lyase |
Protein accession | YP_001474573 |
Protein GI | 157375973 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1760] L-serine deaminase |
TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.947815 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000107679 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATAAGTG TTTTCGACAT GTTCAAGATT GGCATAGGGC CTTCGAGTTC TCATACTGTG GGTCCGATGA AGGCTGGCAA TATCTTTATT AATGATCTTG ATAGAAAAGG ACTTCTTGAA TCTACCGATG AGTTAAGATC TGAACTGTTT GGCTCCTTAG GGCAAACAGG AAAAGGCCAT GGCACCGGCA AAGCGGTGAT CCTTGGTCTC ATGGGTGAAG CACCGGATAC AGTCGATACC GATATCATAG ACAAGGTACT CAAAGAGGTC AGCGAATCAG AACAGTTACA GATGGCAAAT GGAACAAACG TCATTTTCAG CCGTGACGCC GGAGTCATCT ACCATAGACG TAAAAGCTTA CCCGCCCACG CCAATGCCAT GACGCTATAT GCTTTCTCAA AGGGTAAGTG CATCTATGAG AGAACCTATT ATTCGGTAGG TGGTGGCTTT ATTCTGGACG AAGATGAAAT CAAAGCCCAA GACGCCTCTC CTGCCGCGCC AATTCAATCT GCTCCCTTTG ATTTTAACAG CGCCAGTGAG CTTCTGGCGG CATGCACAGA CAATGGTTTG AGTATCTCTT CACTCATGAT GGCGAATGAG CTCAGTGTCG CCCCCGAGAA TCAGATAAGA GAACAGCTTT GGCACATTTG GCAGACAATG AAAAATTGTG TCGAGCGTGG TTACCAGAAA GAGGGAATTT TACCCGGAGG CTTGAAATTA AGACGCCGTG CTCCCGCAAT GTACCGCAGG TTAAAGGCTG AAGGTAAGAA TAATATCGAT CCCTTAACTG CTTTGGATTG GGTGGATCTA TTCGCGCTAT CGGTAAATGA GCAAAATGCG GCGGGCGATC GAGTCGTAAC GGCTCCAACA AACGGCGCGG CCGGTATTAT TCCTGCGGTA CTGTGTTATT ACGATACCTT TGTCGAGGAG GTCGATATTG ACGTCTGCAG TCGCTACCTG TTAACTGCTG CTGCAATCGG TATTCTCTAT AAGAAAAACG CCTCAATTTC CGGTGCCGAA GTTGGCTGTC AGGGCGAAGT TGGCGTAGCC TGCTCGATGG CCGCCGGTGC TCTGACCGAG ATCATGGGCG GCACTATCGA GCATGTCGAA AATGCCGCAG AGATAGGTAT GGAGCATAAC TTAGGCTTAA CTTGTGATCC CGTCGGTGGC TTGGTGCAAG TCCCTTGTAT AGAACGAAAT GCCATGGGCG CGGTGAAGGC CATCAATGCC TCCAGAATGG CGCTACGCGG TGACGGAAAT CATAAAGTCT CACTGGATAA AGTCATAAAA ACTATGATGG ACACAGGTAA AGACATGAGA AGCAAGTACA AGGAAACGGC AAAGGGTGGG TTAGCAGTAA ATATCGTTGA ATGTTAA
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Protein sequence | MISVFDMFKI GIGPSSSHTV GPMKAGNIFI NDLDRKGLLE STDELRSELF GSLGQTGKGH GTGKAVILGL MGEAPDTVDT DIIDKVLKEV SESEQLQMAN GTNVIFSRDA GVIYHRRKSL PAHANAMTLY AFSKGKCIYE RTYYSVGGGF ILDEDEIKAQ DASPAAPIQS APFDFNSASE LLAACTDNGL SISSLMMANE LSVAPENQIR EQLWHIWQTM KNCVERGYQK EGILPGGLKL RRRAPAMYRR LKAEGKNNID PLTALDWVDL FALSVNEQNA AGDRVVTAPT NGAAGIIPAV LCYYDTFVEE VDIDVCSRYL LTAAAIGILY KKNASISGAE VGCQGEVGVA CSMAAGALTE IMGGTIEHVE NAAEIGMEHN LGLTCDPVGG LVQVPCIERN AMGAVKAINA SRMALRGDGN HKVSLDKVIK TMMDTGKDMR SKYKETAKGG LAVNIVEC
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