Gene Ssed_2838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2838 
Symbol 
ID5613180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3430588 
End bp3431964 
Gene Length1377 bp 
Protein Length458 aa 
Translation table11 
GC content48% 
IMG OID640933757 
ProductL-serine ammonia-lyase 
Protein accessionYP_001474573 
Protein GI157375973 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1760] L-serine deaminase 
TIGRFAM ID[TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.947815 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000107679 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATAAGTG TTTTCGACAT GTTCAAGATT GGCATAGGGC CTTCGAGTTC TCATACTGTG 
GGTCCGATGA AGGCTGGCAA TATCTTTATT AATGATCTTG ATAGAAAAGG ACTTCTTGAA
TCTACCGATG AGTTAAGATC TGAACTGTTT GGCTCCTTAG GGCAAACAGG AAAAGGCCAT
GGCACCGGCA AAGCGGTGAT CCTTGGTCTC ATGGGTGAAG CACCGGATAC AGTCGATACC
GATATCATAG ACAAGGTACT CAAAGAGGTC AGCGAATCAG AACAGTTACA GATGGCAAAT
GGAACAAACG TCATTTTCAG CCGTGACGCC GGAGTCATCT ACCATAGACG TAAAAGCTTA
CCCGCCCACG CCAATGCCAT GACGCTATAT GCTTTCTCAA AGGGTAAGTG CATCTATGAG
AGAACCTATT ATTCGGTAGG TGGTGGCTTT ATTCTGGACG AAGATGAAAT CAAAGCCCAA
GACGCCTCTC CTGCCGCGCC AATTCAATCT GCTCCCTTTG ATTTTAACAG CGCCAGTGAG
CTTCTGGCGG CATGCACAGA CAATGGTTTG AGTATCTCTT CACTCATGAT GGCGAATGAG
CTCAGTGTCG CCCCCGAGAA TCAGATAAGA GAACAGCTTT GGCACATTTG GCAGACAATG
AAAAATTGTG TCGAGCGTGG TTACCAGAAA GAGGGAATTT TACCCGGAGG CTTGAAATTA
AGACGCCGTG CTCCCGCAAT GTACCGCAGG TTAAAGGCTG AAGGTAAGAA TAATATCGAT
CCCTTAACTG CTTTGGATTG GGTGGATCTA TTCGCGCTAT CGGTAAATGA GCAAAATGCG
GCGGGCGATC GAGTCGTAAC GGCTCCAACA AACGGCGCGG CCGGTATTAT TCCTGCGGTA
CTGTGTTATT ACGATACCTT TGTCGAGGAG GTCGATATTG ACGTCTGCAG TCGCTACCTG
TTAACTGCTG CTGCAATCGG TATTCTCTAT AAGAAAAACG CCTCAATTTC CGGTGCCGAA
GTTGGCTGTC AGGGCGAAGT TGGCGTAGCC TGCTCGATGG CCGCCGGTGC TCTGACCGAG
ATCATGGGCG GCACTATCGA GCATGTCGAA AATGCCGCAG AGATAGGTAT GGAGCATAAC
TTAGGCTTAA CTTGTGATCC CGTCGGTGGC TTGGTGCAAG TCCCTTGTAT AGAACGAAAT
GCCATGGGCG CGGTGAAGGC CATCAATGCC TCCAGAATGG CGCTACGCGG TGACGGAAAT
CATAAAGTCT CACTGGATAA AGTCATAAAA ACTATGATGG ACACAGGTAA AGACATGAGA
AGCAAGTACA AGGAAACGGC AAAGGGTGGG TTAGCAGTAA ATATCGTTGA ATGTTAA
 
Protein sequence
MISVFDMFKI GIGPSSSHTV GPMKAGNIFI NDLDRKGLLE STDELRSELF GSLGQTGKGH 
GTGKAVILGL MGEAPDTVDT DIIDKVLKEV SESEQLQMAN GTNVIFSRDA GVIYHRRKSL
PAHANAMTLY AFSKGKCIYE RTYYSVGGGF ILDEDEIKAQ DASPAAPIQS APFDFNSASE
LLAACTDNGL SISSLMMANE LSVAPENQIR EQLWHIWQTM KNCVERGYQK EGILPGGLKL
RRRAPAMYRR LKAEGKNNID PLTALDWVDL FALSVNEQNA AGDRVVTAPT NGAAGIIPAV
LCYYDTFVEE VDIDVCSRYL LTAAAIGILY KKNASISGAE VGCQGEVGVA CSMAAGALTE
IMGGTIEHVE NAAEIGMEHN LGLTCDPVGG LVQVPCIERN AMGAVKAINA SRMALRGDGN
HKVSLDKVIK TMMDTGKDMR SKYKETAKGG LAVNIVEC