| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2833 |
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| Symbol | |
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| ID | 5613537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3423275 |
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| End bp | 3426748 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933752 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001474568 |
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| Protein GI | 157375968 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000601821 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00381117 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACCTT TTTCAGTATT GACTCCGCCA GCAGTAAAAA GCGCAACCAG AGCGCAAACA
CTATTTACCT TAGGTGGCGC GTCTCAAGCC ATCACGTTAG CCAATATAGT CCAAAAGCAT
GATGGCTTGA CCTTGGCTGT GACTAACGAC ACTCCCACGG CTCTTTTACT GGAAACTGAA
TTAACCTATT TGTTGAAGGA AAAAGATATT CCGGTGTGGA TATTTCCAGA TCGGGAAACC
TTGCCCTATG ACAACTTCTC GCCGCATCAA GACCTGGTGT CACAGCGACT GGAGACCCTG
TCACGGATCC CCAATGCAAA ACAGAGTCTG GTCATCGTCC CCATTACAAC CTTGATGATG
CGTTTGCCAC CAAAATCATT TCTGGCCGGT AATGTGCTGC TGTTAACTAA AGGCGATAAC
TACTGCCTGC AGGATGTAAA ACAGCAACTG GTCGATACCG GTTACCATAT GGTGGAGCAA
GTCTATGAGC ATGGCGAGTT TGCCGTCAGG GGGTCTATCA TCGACCTCTT CCCTATGGGA
TCGACTCAGC CCTACCGCAT AGAGCTGTTT GACGACGAGG TAGAGTCAAT TCGCTATTTT
GACCCGGAAA CTCAACGCTC CAGCGGAACC ATAGATTCCG TACGCTTGCT ACCTGCCAAG
GAGTTTCCTA CCAACGATGC AGCGATAGAG GGGTTCAGAC AAAGATACCG CCGTCGATTT
GAGGTTCTGG TTAAAGAGCC TGAATCTGTC TACCAGATGG TCAGTAGAAA ACTGCTCCCC
GCAGGAATAG AAAACTACCT GCCCCTTTTC TTCGACGATA CAGCCAGCTT ATTTGATTAC
CTTCCCGATG ATGCTCAACT GGTGAACATT GGCGATCTGG AGCAGGCTGT AAAAACGCAT
TTGGCGGAGA TCGAGATCCG CTATGAGAAT AGGCGAGTCG ATCCACTGCG GCCATTATTA
TCTCCAAAAG AACTCTATCT ACTCACTGAA CAGATTTTCT CGGAATTTAA GCAACACCCC
AGAACACTGC TTAAAGTCGG TGATGCTCAG GAGTCTGGTC ATCAGGCAAA GCTTGAGGTT
TTACCTGATG TGACTGCTAA CCACAAACTC AAGCAGCCAC TGAGTTTACT GCAAGAGTTT
AGCGAAGGTG CTGGCAATAT ACTCTTCAGC GCCGAATCAG AGGGCAGACG TGAAGCCTTG
TTTGAGCTGC TGAGTAAAAT CGACATTAAG CCCAAACTAT TCGCCCATTT CGATGACTTT
GTCCTTTCAA ACGCTAAGCT TGGCTTGATC GTATCTCCTC TCTCTAAGGG ATGTATTGTC
GAAAAATCAC GTGGGGCGAA ATTCAGTATC ATCTGTGAAA CTGAGCTCTT CGGGCACAAG
ATTTCGCAAA AGCGACGCCG AGACAAGCAA AGGCAGATCA GTAGTGACGC GCTGGTCAAA
AACCTGGCCG AATTAAAAGT GGGTCAACCC ATCGTTCATC TGGATCACGG TGTCGCCAGA
TATATGGGAC TCGAAACCTT AGATACCGGT GGCTTGATCG CCGAATACCT GATGTTAGAG
TATTCCGGTG GTGATAAGCT CTATGTCCCG GTCTCATCTC TTCACCTTAT CAGCCGCTAT
AGCGTAGGGC CCGATGAAGA GGCGAACCTC AATAAACTCG GCAACGAGAC CTGGGCAAAG
GCGAAGAGAA AAGCGGTCGA GAAGATCCGT GATGTCGCCG CAGAGTTACT CGATGTCTAT
GCCAGACGAC AGGCAAGACC CGGAGATGCA TGCAAGGTGA TCGAGGAGGA GTATGCGCAA
TTTGCCAATA GTTTCCCCTT CGAGGAAACC GTCGATCAGG AAACGTCAAT TAACGCTGTC
ATGACCGATA TGTGCTCCCC GATAGCCATG GATAGACTCG TATGTGGTGA TGTGGGTTTC
GGTAAGACCG AGGTGGCAAT GCGCGCGGCT TTTGTCGCGG TCAATGACGG CAAACAGGTC
GCTATATTAG TGCCGACGAC GCTGCTGGCT CAACAACACT ACGAAAATTT CAAAGACAGA
TTTGCCGATT GGCCGGTGAA GATAGAGGTC ATGTCGCGTT TCAAAACGGC TAAAGAGCAA
AAGCATGTCA TGGAGGAGTT AGCCAATGGG AAAGTCGACA TTGTTATTGG CACCCATAAG
TTACTTCAAT CCGATGCTAA ATTCGAAAAC CTGGGATTGT TGGTGATCGA TGAGGAACAT
CGATTCGGCG TAAGACAGAA GGAAAAGATC AAAGCCTTAA GAGCCAATGT TGATATCTTA
ACCCTGACAG CGACTCCGAT CCCAAGAACA CTCAATATGG CGATGTCCGG GATGCGGGAT
CTGTCAATTA TCGCAACCCC TCCGGCGAAG CGATTATCGG TAAAAACCTT TATAAGGGAG
TATGACGATA CGACCGTGAT AGAGGCTCTG CAACGTGAGA TCTTACGTGG TGGACAAGTT
TACTTCTTGC ATAACAATGT CGAGTCAATC GAAAAGCGTG CCAGTGAGTT AAGTGAGTTG
CTTCCTGAGG CGCGTGTTGT CACGGCTCAT GGTCAGATGC GTGAGCGTGA ACTTGAAAAA
GTGATGTCCG ACTTCTACCA TCAAAAATTT AATGTTTTAG TCTGTACTAC CATTATCGAA
ACGGGCATCG ATGTCCCCTC TGCTAACACC ATTATCATCG AGCGTGCCGA TAAGTTTGGT
CTGGCACAAC TGCATCAACT CAGAGGCCGT GTTGGTCGCT CACATCACCA GGCGTATGCC
TACCTGATGA CCCCCCATCC TAAGCGCATG ACAAAAGATT CCGTCAAGCG GCTTGAGGCG
ATTGGCGCCT TAGAAGATCT GGGCGCCGGA TTTTTATTGG CCACTCAAGA TCTGGAGATC
CGAGGTGCAG GCGAACTGCT GGGTGATGAA CAAAGCGGTC ATATATCTAA AATTGGCTTC
ACTCTCTATA TGGAGATGCT CGAGGACGCA GTGAAGTCAC TCAAAGAGGG AAAAGAGCCC
TCACTCGATC AGATGCTAAG GCACCAATGT GAAATCGAAC TTCGTATTCC CGCCCTGCTT
CCCGATGATT TTGTTCACGA TGTCAACATC AGGCTATCGC TCTACAAGAG GATAGCAAAC
TGTGAAACAG AGCAGGCGCT GGATGAACTC AGGGTGGAAT TGATCGACCG CTTTGGTTTA
CTCCCGGATG CCACTAAGAA TTTGATGGAA TTAACCCTTT ATAAACATCA AGCTACGGCT
TTAGGCATTA AAAAGCTCGA GATGCATGCT AAGGGCGGAA GTCTGGAGTT CAACGATGAT
CATAAGGTCG ATCCTGGTTT TATCATCGGA TTACTCCAGA GCCAACCACA AAACTATCGA
ATGGATGGCC CGAGTAAGTT AAAATTCATC ATCCCTGCAG AGTCATACTC TGACAGGCTA
GCCCTGGTCA AGTTGTTACT AGGGCAATTA TCACAACACC GTCTTGGAGA ATAA
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| Protein sequence | MKPFSVLTPP AVKSATRAQT LFTLGGASQA ITLANIVQKH DGLTLAVTND TPTALLLETE
LTYLLKEKDI PVWIFPDRET LPYDNFSPHQ DLVSQRLETL SRIPNAKQSL VIVPITTLMM
RLPPKSFLAG NVLLLTKGDN YCLQDVKQQL VDTGYHMVEQ VYEHGEFAVR GSIIDLFPMG
STQPYRIELF DDEVESIRYF DPETQRSSGT IDSVRLLPAK EFPTNDAAIE GFRQRYRRRF
EVLVKEPESV YQMVSRKLLP AGIENYLPLF FDDTASLFDY LPDDAQLVNI GDLEQAVKTH
LAEIEIRYEN RRVDPLRPLL SPKELYLLTE QIFSEFKQHP RTLLKVGDAQ ESGHQAKLEV
LPDVTANHKL KQPLSLLQEF SEGAGNILFS AESEGRREAL FELLSKIDIK PKLFAHFDDF
VLSNAKLGLI VSPLSKGCIV EKSRGAKFSI ICETELFGHK ISQKRRRDKQ RQISSDALVK
NLAELKVGQP IVHLDHGVAR YMGLETLDTG GLIAEYLMLE YSGGDKLYVP VSSLHLISRY
SVGPDEEANL NKLGNETWAK AKRKAVEKIR DVAAELLDVY ARRQARPGDA CKVIEEEYAQ
FANSFPFEET VDQETSINAV MTDMCSPIAM DRLVCGDVGF GKTEVAMRAA FVAVNDGKQV
AILVPTTLLA QQHYENFKDR FADWPVKIEV MSRFKTAKEQ KHVMEELANG KVDIVIGTHK
LLQSDAKFEN LGLLVIDEEH RFGVRQKEKI KALRANVDIL TLTATPIPRT LNMAMSGMRD
LSIIATPPAK RLSVKTFIRE YDDTTVIEAL QREILRGGQV YFLHNNVESI EKRASELSEL
LPEARVVTAH GQMRERELEK VMSDFYHQKF NVLVCTTIIE TGIDVPSANT IIIERADKFG
LAQLHQLRGR VGRSHHQAYA YLMTPHPKRM TKDSVKRLEA IGALEDLGAG FLLATQDLEI
RGAGELLGDE QSGHISKIGF TLYMEMLEDA VKSLKEGKEP SLDQMLRHQC EIELRIPALL
PDDFVHDVNI RLSLYKRIAN CETEQALDEL RVELIDRFGL LPDATKNLME LTLYKHQATA
LGIKKLEMHA KGGSLEFNDD HKVDPGFIIG LLQSQPQNYR MDGPSKLKFI IPAESYSDRL
ALVKLLLGQL SQHRLGE
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