| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2820 |
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| Symbol | |
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| ID | 5613963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3404485 |
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| End bp | 3405576 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933739 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001474555 |
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| Protein GI | 157375955 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0120499 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.368522 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTCTC TAAACAAACG CGCTAATAAC TGTTTCAAAA TCGCCCTTCC ACTGCTATTA
GCTGCCGTAT TAAGTGCCTG TGGTGCAGAA GAGGAAGTTA AGGAAGAGGA AAAATATGCG
GTACCGGTTG AAACGACAAC CGTCATCCAG GGTGATGTCT CCTCATTTTA CAGTACGACT
GCGACCTTAG AAGCACCACA AGAAGCTAAC GTTGTCACAC GTATTTCCGG TTTAATCGAG
AGTATTAACG TTGAAGAGGG CGACCGGGTC ACCAAGGGGC AGCTCCTTGC TGTTATCGAT
GCTAAGAGAC AGAGATTTGA ACTTGCCCGT TCACAAGCCG AAGTTGAAAT TATCGAGCAA
GAGCTAAACC GGCTTAAAAA GATGAGCAAC AAGGAATTTT TCAGCGCGGA CTCTATGGCC
AAGCTCGAGT ACAACCTGCA AGCCGCTATC GCCAAACGAG ATTTAGCCGC ACTTCAGGTT
CAGGAAAGTA TGGTTCGCTC CCCTATCGAT GGTGTGATAG CGACGCGATT TGTAAAAGCC
GGCAATATGG CCAAAGAGTT TGATGAACTG TTTTATGTTG TGAATCAGGA TGAACTCTAT
GGCATCGTTC ACCTACCCGA GCAACAACTA CAGAGTCTTC GCTTAGGACA AGACGCCCAA
CTCTTTGCAA ATAGTTTTGC CAACGAGCAC ACAGCTAAAA CGGTGCATGC CAAAGTGCTT
CGTATCAGTC CGGTCGTCGA TGCTCAAAGT GGCACGTTCA AAGTGACCCT GTCGGTACCA
AACCAAAATG CCACCCTAAA AGCCGGCATG TTCACACGTG TTGAGCTTAG GTATGACACA
CACAATAATG TGATCACCGT GCCATATAAC GCCGTGGTCA ATCAGGATAA TGAGTTTGCC
CTGTATGTGA TTGATGGTGA TAACGCGAAT CGTCGCGCAG TGTCGTTAGG TTATCGTGAG
GCCGATACCG TAGAGATAGT CGCAGGTATC GAACCCGGTG AGCAGATCGT CATTCGAGGC
CACCAGAACC TGAAAGATCA ATCCCTTGTC GAAGTGATTG GTTCATTAGA CTTAGCATCT
GCAACTAAAT AA
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| Protein sequence | MDSLNKRANN CFKIALPLLL AAVLSACGAE EEVKEEEKYA VPVETTTVIQ GDVSSFYSTT
ATLEAPQEAN VVTRISGLIE SINVEEGDRV TKGQLLAVID AKRQRFELAR SQAEVEIIEQ
ELNRLKKMSN KEFFSADSMA KLEYNLQAAI AKRDLAALQV QESMVRSPID GVIATRFVKA
GNMAKEFDEL FYVVNQDELY GIVHLPEQQL QSLRLGQDAQ LFANSFANEH TAKTVHAKVL
RISPVVDAQS GTFKVTLSVP NQNATLKAGM FTRVELRYDT HNNVITVPYN AVVNQDNEFA
LYVIDGDNAN RRAVSLGYRE ADTVEIVAGI EPGEQIVIRG HQNLKDQSLV EVIGSLDLAS
ATK
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