| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2814 |
|---|
| Symbol | sucA |
|---|
| ID | 5613671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3396001 |
|---|
| End bp | 3398823 |
|---|
| Gene Length | 2823 bp |
|---|
| Protein Length | 940 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640933733 |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 component |
|---|
| Protein accession | YP_001474549 |
|---|
| Protein GI | 157375949 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCAAG GCATCATGAA AGCCTGGCTC GAATCATCAC ACCTAAGTGG TGCTAATTCG
ACCTATGTAG AAGAGATGTA TGAAGCCTAT CAAGAAGACC CTCAGTCTGT TTCCCAAGAC
TGGCAAGTGG TGTTTGATAA CCTCCCTTAC GCGAATGGCA CGTCGAAAGA TGTGCCCGAA
GCAGCTCACT CTAAAGTACG TGATTATTTT CGTAGTTTAG CGCTCGAAGG TCGTCAGACG
GGCTCTGCCC GAGTGACAGA TCCGGAAGTT GATGCTAAGC AAGTTAAAGT CCTACAGATG
ATCAACGCTC ATCGATTCCG TGGTCACCAG AATGCTAATT TAGATCCTCT GGAGCTTTGG
AAGCGTGATC AGGTATCTGA ACTGGATCCA GCCTTCCATG GTTTAACTGG CGAAGATATG
CTGCGTGAAT TCAATACGGG TTCATTTGCT CATGGTGGTG ATACCATGCA GCTTGGCGAA
CTTGTTAAAG CCCTTAAAGC GACATATTGT GGCTCTATCG GTGCTGAATA CATGCACATT
ACCGATACCG ATGAGAAACG CTGGATACAG CAAAGGTTAG AACCTTCTTT AGGTAGAGCT
CATTACGACA AATCCATCAA AACACGTATC TTAGCCGGCT TAAATGCCGC CGAAGGTATG
GAGAAATATC TGGGGGCTAA GTTCCCCGGT GCAAAACGTT TTTCACTGGA AGGTGGCGAT
GCGTTAGTAC CTATGATGCG TGAGATTATC TATCGCGCAG GTGAAGCCGG AACTAAAGAA
GTGGTTGTGG GTATGGCTCA CCGAGGCCGA CTGAACCTAC TTATCAACGT GTTAGGTAAA
AAGCCTTCAG AATTGTTTGA TGAATTCGCG GGAAAACACA GTGATGAACT TAATGGTTCA
GGCGATGTTA AATACCACCA AGGTTTCTCA TCAGACTTTG AAACGCCGGG CGGAAACGTT
CACCTTGCAT TGGCGTTTAA CCCGTCGCAT CTGGAGATCG TCAACCCGGT TGTTATGGGC
TCAGTTCGCG CTCGACTCGA TCGCCACGGC TGTGAAGAAG GCCTTAAAGT ATTACCAATC
ACTATTCATG GTGATTCTGC CATTACCGGT CAAGGCATAG TACAAGAGAC ATTTAACATG
TCTCAAACTC GTGGCTTCAA AGTGGGCGGA AGCATTCGAA TCGTAATTAA TAACCAAGTT
GGTTTTACGA CTAACCTAAC CGAAGATGTG CGTTCGACAG AATACTGTAC CGATATCGCT
AAGATGGTGC AGGCACCTAT CTTCCACGTT AATGCCGACG ATCCCGAAGC GGTTGCCTTC
ATCTCTCAGC TTGCCGTCGA TTATCGAAAC GAATTTAAGC GTGATGTGGT TATCGATCTG
GTTTGTTACC GCCGCCATGG TCATAACGAA GCGGATGAGC CCAGTGCGAC TCAACCATTG
ATGTACGCTA AAATTAAGAA GCATCCTACG CCTCGTAAAA TTTATGCCGA TCGATTGATT
GCCGAGCAGA CCTTAGGTGC CGATGACGTC ACCTCTATGG TCAACGATTA CCGAGATGCG
CTGGATCACG GTGATTGTGT CGTGTCTGAA TGGCGTCCGA TGACATTGCA TTCGGTTGAC
TGGTCTCCTT ATATCAACAG AGAGTGGGAT GAAGATTATC CGGCTCAGAT GTCGATGGAG
AGAATCAAGA ATTTAGCCGA GAAGATCAGC TATGTTCCTG AAGGTCATAA GCTTCAGTCC
CGTGTAGCCA AGATCTACAA AGATCGAGCC TTGATGGCTA GTGGTGAAAA ACTCCTCGAT
TGGGGTTTTG CCGAGACTCT GGCTTACGCG TCGATTGTTG AAGATAAGAA ACGTATTCGT
ATTACCGGTC AGGATTCCGG TCGTGGTACC TTCTTCCATC GTCATGCGGT TCTGCATAAT
CAAAATGATG CGACGGCATA TTTGCCACTT CGCAACATTG CCGATGAGCA GGGTCCCATC
GATATTACTG ACTCAGTCCT GTCTGAAGCC TCTGTATTGG CGTTCGAATA TGGTTACGCT
ACCGCAGAGC CAGGTGGATT AACACTTTGG GAAGCGCAAT TTGGTGACTT TGCCAACTGT
GCTCAAGTGG TTATCGATCA GTTCCTGTCA TCGGGTGAGC AGAAGTGGGG CCGTTTATGT
GGTCTGACTA TGTTACTGCC TCATGGCTAC GAAGGTCAGG GACCGGAGCA CTCGAGTGCC
CGACTGGAGC GATTCCTACA GCTTTGTGCT AATCACAACA TGCAAGTCTG TGTGCCTTCT
ACTCCGGCGC AGGTTTACCA TATGTTGCGT CGTCAGGTTG TCAGGCCTAT GCGACGTCCG
CTCGTTGTGA TGTCTCCTAA GTCACTGCTA CGTCATCCAT TGGCGGTATC TAGCATGGAA
GAGCTTGCCG AAGGCAGCTT CCAGAACATC ATCCCTGAGA TGGAAAGCTT AGATAATACA
AACGTTGACC GTGTGGTTTT CTGTAGTGGT AAAGTTTACT TCGAACTATT AGAAAAGCGT
CGCAAAGAGA ATGTGACTAA TGTCGCCCTT GTTCGTGTGG AGCAGTTATA TCCGTTCCCT
CATGAAGATA TGGAGACGAT TTTAGCCGAT TATCAGCACG TCAAAGATTT TGTCTGGTGC
CAGGAAGAGC CTCAAAACCA AGGCGCCTGG TACTGCAGTC AGCATCATTT CTGGAGCTCA
ATTCCAGCAG GTGCCCAGCT AACTTATGCC GGACGTGAAG CATCTGCTGC ACCGGCCTGT
GGTTACCCGG CATTGCATGC TCAGCAACAA GAGTCTTTGA TTAATAGCGC ATTAAAACTG
TAG
|
|---|
| Protein sequence | MHQGIMKAWL ESSHLSGANS TYVEEMYEAY QEDPQSVSQD WQVVFDNLPY ANGTSKDVPE
AAHSKVRDYF RSLALEGRQT GSARVTDPEV DAKQVKVLQM INAHRFRGHQ NANLDPLELW
KRDQVSELDP AFHGLTGEDM LREFNTGSFA HGGDTMQLGE LVKALKATYC GSIGAEYMHI
TDTDEKRWIQ QRLEPSLGRA HYDKSIKTRI LAGLNAAEGM EKYLGAKFPG AKRFSLEGGD
ALVPMMREII YRAGEAGTKE VVVGMAHRGR LNLLINVLGK KPSELFDEFA GKHSDELNGS
GDVKYHQGFS SDFETPGGNV HLALAFNPSH LEIVNPVVMG SVRARLDRHG CEEGLKVLPI
TIHGDSAITG QGIVQETFNM SQTRGFKVGG SIRIVINNQV GFTTNLTEDV RSTEYCTDIA
KMVQAPIFHV NADDPEAVAF ISQLAVDYRN EFKRDVVIDL VCYRRHGHNE ADEPSATQPL
MYAKIKKHPT PRKIYADRLI AEQTLGADDV TSMVNDYRDA LDHGDCVVSE WRPMTLHSVD
WSPYINREWD EDYPAQMSME RIKNLAEKIS YVPEGHKLQS RVAKIYKDRA LMASGEKLLD
WGFAETLAYA SIVEDKKRIR ITGQDSGRGT FFHRHAVLHN QNDATAYLPL RNIADEQGPI
DITDSVLSEA SVLAFEYGYA TAEPGGLTLW EAQFGDFANC AQVVIDQFLS SGEQKWGRLC
GLTMLLPHGY EGQGPEHSSA RLERFLQLCA NHNMQVCVPS TPAQVYHMLR RQVVRPMRRP
LVVMSPKSLL RHPLAVSSME ELAEGSFQNI IPEMESLDNT NVDRVVFCSG KVYFELLEKR
RKENVTNVAL VRVEQLYPFP HEDMETILAD YQHVKDFVWC QEEPQNQGAW YCSQHHFWSS
IPAGAQLTYA GREASAAPAC GYPALHAQQQ ESLINSALKL
|
|---|
| |