| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2752 |
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| Symbol | |
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| ID | 5611975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3319397 |
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| End bp | 3321607 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933671 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001474487 |
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| Protein GI | 157375887 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000933457 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.355865 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTATTT TTAAACCGTT TACTTTTAAA CCATTTACTT TTAAATCACT TAGTTTCAGA
TCTGATACGT TAAAACGCGT ATCACCAGTC GCACTTGCCA TCTCTACGGC ATTGACCAGC
GGCTATGCCT TCTCTGCCGA ACCAGCCAAT GAACCTACCA CCTCCGATGA GATGGAAGTG
ATTGTGGTTA CTTCCGATTT CAGAGGCGCT TCCTTAGACA AAATGCCGTC GAGTATTACC
GTTATCGATC AACAGCAGAT TGAGGATGAG GGGGCTCAGC ATTTTGAAGA GGTGCTCAAC
TCGATTGCTA ACTTCAACTG GTCCGGTGGA AGTTCGAGAC CTAAATACTT CCAGATCCGA
GGTGTCGGAG AGCAGGAGGA GTATCAAGGG GCACCTAATT CTTCGGTCGG TTACATCATC
GATGATATCG ATATGTCCGG TCTTGGCATG ATCTCCAGCA TGTATGATCT TCAGCAGGTT
GAAGTGCTTC GCGGCCCTCA AGGAACGCGC TACGGTGCTA ACGCATTAGC AGGCTTAATC
TACCTTAAGA GTAATGATCC CACCGATGTC TTTGAGCATG GCGCCGAAGT GTCGATGGGT
GATGATGACC TCACTACATT CAGTGGTTTT AGCTCGGGTC CATTGACTGA TTCGGGCAAG
TTACTCTATC GGGTATCTTT GCAGCAACAT AAACAAAACG GCTATAGAGA TAACCTCTAC
CTGGGCCGGG ATGATACCAA TGGGCGTGAT GAGTTTACCG GACGTGCCAA ATTACGCTGG
TATGCGACCG ACCATCTTGA GCTCGACCTT ACCCTGCTTC ATGCCGATTA TGATAATGGC
TACGATGCCT GGACATTAGA TAACAATGGC TTCGATACGC TCACCGATGA GCCCGGTGTC
GATAAACAGC GCACCACAGG TAGCTCGCTG AAGATGACCT ATTCCGGAGC CGAGTCATTC
GAGCTCGTCT CTTTGACCTC TTATGCGCAA ACTCAGCATC ATCATGGTTA CGATGGCGAT
TGGGCTAACC CGGATTATTG GGGGGATCTG ACCTGTTATG GCGAGGCTTG CCAATATGAC
TACACCTGGA ACAAAGAGGG TGAACGCAAA TCCGTTAGCC AGGAGTTCAG ACTGAGTTCA
ACCGAAGCCG GACGGATCTT TGCCGGGAGT ACCGACTGGT TAGTGGGTCT CTATGGCATG
AAACTCGATG AAGATAACGA CACATTAGAG ATCTATAACG GTTGGGAAGA TCCGTTAACG
GCAGAATATG AGGCTGAAAA TCTGGCCGTC TTTGCTCAAA TAGACTCAGA CTTAGGCAAT
GATTACTCCC TCTCTGTTGG TGCCAGAGTC GAGAGCCGTG ACAGTGAGTA TGCCGATAGT
GCCGGCGATG CGTTTAACCC GAGTGAAACG ATGTGGGGCG GGCATATTGC TCTGAGTAAG
GCTATAAGTC TCACTCAGCA GGCCTATGTC AGAGTCGCGC GTGGTTATAA GGCGGGTGGC
TTTAATATGT CGCTGCCAAC CGAGCTGTCG GACAAGAAAG AGTACGATAC CGAGACCCTA
TATAACTATG AAATAGGACT TAAATCCAAC TGGTTAGAGG GGCAGGCGTC AACCAATTTA
TCATTTTTCT ATATGGACAG ACGTGATCAA CAGGTGTCGG CCTCACAGCA GAACCCTGAT
GAGCCACAGA AATTCATCTT ATATACAGAG AACGCGGGAA GCTCGCACAA TTATGGAGCC
GAGTTAGAGG GGAACTGGTA CGCGACTGAT AATCTAAAGC TTTATGCCAC TCTGGGCTGG
CTTGAAACTG CCTATGGTGA TTATGAGTAT CAGGATAAGT ATGGCGGAAC CGTCGACCTG
TCGGGCCGTG AACTCGCTCA TTCTCCTAAC TTTACCTATA GTGCCGGTGC CACCTATCGC
ACCGATTCAG GCTGGTTCGC TAACCTGACG ACCAGTGGTA AGAGTGATTT CTACTACTCA
GACAGCAACG AGTCTAAGTC TGATGCCTAT ACTATCTTTA ATGCGCGTAT GGGTTATGAG
ACCGATCTCT GGTCAGCCTA CCTGTGGGGG CGTAACTTGT TTGATGAACA ATATGGCACC
CGTGGCTTCT ACTTCGGGAA CGAGCCGGAT CAGGATTGGG CCGATAAGCA ATATATTCGT
TATGGGGATC CGCGCCAGTT AGGATTAACC GTTAACGTCA AGTTTATGTA A
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| Protein sequence | MSIFKPFTFK PFTFKSLSFR SDTLKRVSPV ALAISTALTS GYAFSAEPAN EPTTSDEMEV
IVVTSDFRGA SLDKMPSSIT VIDQQQIEDE GAQHFEEVLN SIANFNWSGG SSRPKYFQIR
GVGEQEEYQG APNSSVGYII DDIDMSGLGM ISSMYDLQQV EVLRGPQGTR YGANALAGLI
YLKSNDPTDV FEHGAEVSMG DDDLTTFSGF SSGPLTDSGK LLYRVSLQQH KQNGYRDNLY
LGRDDTNGRD EFTGRAKLRW YATDHLELDL TLLHADYDNG YDAWTLDNNG FDTLTDEPGV
DKQRTTGSSL KMTYSGAESF ELVSLTSYAQ TQHHHGYDGD WANPDYWGDL TCYGEACQYD
YTWNKEGERK SVSQEFRLSS TEAGRIFAGS TDWLVGLYGM KLDEDNDTLE IYNGWEDPLT
AEYEAENLAV FAQIDSDLGN DYSLSVGARV ESRDSEYADS AGDAFNPSET MWGGHIALSK
AISLTQQAYV RVARGYKAGG FNMSLPTELS DKKEYDTETL YNYEIGLKSN WLEGQASTNL
SFFYMDRRDQ QVSASQQNPD EPQKFILYTE NAGSSHNYGA ELEGNWYATD NLKLYATLGW
LETAYGDYEY QDKYGGTVDL SGRELAHSPN FTYSAGATYR TDSGWFANLT TSGKSDFYYS
DSNESKSDAY TIFNARMGYE TDLWSAYLWG RNLFDEQYGT RGFYFGNEPD QDWADKQYIR
YGDPRQLGLT VNVKFM
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