Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2747 |
Symbol | |
ID | 5613949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3315715 |
End bp | 3316263 |
Gene Length | 549 bp |
Protein Length | 182 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640933666 |
Product | nitroreductase |
Protein accession | YP_001474482 |
Protein GI | 157375882 |
COG category | [C] Energy production and conversion |
COG ID | [COG0778] Nitroreductase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.501163 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGACGCTA TCGAATTACT GCTAACCCGT CAGTCATCTC CTCGTCTTGT AGCACCTGGT CCCGACGAGA CTCAATTAAA AAACATTTTG GATGCGGCCG TGAGGGTTCC CGACCATGGG GGCCTCACGC CATGGGAGTT TATTATCGCT CAGGGAGAAG GTTTATCCCG ACTGGGTGAG GCCTTCCTCA ATGCCGTGAT AAAAAAAGGG GGGGATGAGA CCCTGCAAGG TAAGGTGAAA GGGATGCCGC TACGTGCGCC TATGGTTATC GTGGTGGTGG CCAAACCAAA ACCACACCCT AAGGTGCCTG AGTTTGAGCA GCTACTTGCA GCGGGCTGCG CGACGATGGC CATGCAACAG GCGGCTTTTG CTCAAGGGCT TGGTGGCATA TGGCGTACCG GCGATATGGC ATTCGATAAG CATCTTCATC AAGCGCTGGG CCTCGAGGGG AGTGATCAAA TTGTCGGCTT TCTGTATCTG GGGACTCCCG CACTGAAGGC ACCGATAAAA GCGAAACGAG AGGGGGCACA TTTTGTTCGT TATCTCTGA
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Protein sequence | MDAIELLLTR QSSPRLVAPG PDETQLKNIL DAAVRVPDHG GLTPWEFIIA QGEGLSRLGE AFLNAVIKKG GDETLQGKVK GMPLRAPMVI VVVAKPKPHP KVPEFEQLLA AGCATMAMQQ AAFAQGLGGI WRTGDMAFDK HLHQALGLEG SDQIVGFLYL GTPALKAPIK AKREGAHFVR YL
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