| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2682 |
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| Symbol | |
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| ID | 5612130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3238913 |
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| End bp | 3239620 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933601 |
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| Product | ABC transporter |
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| Protein accession | YP_001474417 |
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| Protein GI | 157375817 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.76928 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGCCAGAGG CAAAAGCCGA CACTCTTCAC TTGACCTCGC TTCACTGGCC TCCTTACTCG
GGCAGTACCT TAGAAAAGCA GGGAGCGACT ATTGCAATTA CTCGTGCGGC AATGAGAGCG
GTGGGGCATG AACTTATTGT TGGCTTTTTC CCCTGGAGCA GAGCCATAAG GATGGTAAAC
CGCCCCGAGT CTAAATATAT CGGATATCTA CCGGCTTATA GCTATCCAAC TGATGAATTT
ATATTTTCGG ATCCTTTAGG TGCCAGCCCT TTAGGCTTAG TTGAACAGCA TCTGCATCCC
ATCAGCTGGT CCAGTCTCGC AGACCTTAAT CAGTATCGGC TCGGTGTGGT GAGAGATTAC
ACAAACACGG CCGAGCTAGA TGCCATGATT AAGCTGGGAA CCCAAAGGGT CGAAGTTGTC
AATTCTGATG AACATAACGT AAAAAAGGTG GCAACCGCTC GCATCGATGC CGCAGTCATC
GATCTGCACG TTTTTGGCTA CCTGCTATCT CAAAAAGAGC TGAAGTCACT CGCAGGAAAG
TTACAGATAA ACAAGAAGAC CCTCGAAGAA AAGCAGATGT TTATCGCGTT TAGAAATACG
CCTGAAGGTC ATTACTGGCG AGATATGTTT AATGTTGGCT TATCGAAAAT TGATGCTGCA
TCGATTCTGG ATGAATATAT GTCAGAGGTG AAAACAGGCA GCAAATAG
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| Protein sequence | MPEAKADTLH LTSLHWPPYS GSTLEKQGAT IAITRAAMRA VGHELIVGFF PWSRAIRMVN
RPESKYIGYL PAYSYPTDEF IFSDPLGASP LGLVEQHLHP ISWSSLADLN QYRLGVVRDY
TNTAELDAMI KLGTQRVEVV NSDEHNVKKV ATARIDAAVI DLHVFGYLLS QKELKSLAGK
LQINKKTLEE KQMFIAFRNT PEGHYWRDMF NVGLSKIDAA SILDEYMSEV KTGSK
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