Gene Ssed_2669 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2669 
SymbolushA 
ID5612340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3226352 
End bp3228061 
Gene Length1710 bp 
Protein Length569 aa 
Translation table11 
GC content46% 
IMG OID640933588 
Productbifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 
Protein accessionYP_001474404 
Protein GI157375804 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000803412 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0151204 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAATA AGCTAATAAA AGGTTTAGTT GCAACTGCAG TACTAGTGGC ATTAACTGGT 
TGTGGTAGTG ATAACGATGA CAACGAAGTT GTTCTGCCTG CAACATGTGC TGAAGCCGGT
GAAGCTTGTA CAATTTTCAC CGTACTTCAC ACCAACGATA ACCATGGTCG TTTCTTTGAA
AACAAATACG GCGAGTACGG AATGGCGGCT CGTAAGACGC TGATCGATCA GATCCGTGCT
GAAGTTGAGT CAAACGGTGG TGAGTCACTC TTACTTTCCG GTGGTGATGT GAACACAGGT
GTACCAGAGT CAGATTTGCA AGATGCACGT CCTGATTTCG TCGGTATGAA CCTGATGGGT
TATGACGCTA TGGCTGTCGG TAACCACGAG TTTGACAATC CATTAGAAAC AGTTGATATG
CAGCGTGAAC TGGCTAACTT CCCTATGTTA GCGGCTAACA TTTATGACAA AGTGTCTGGC
GCTCGTTACT TCGAACCATA CAAGGTATTC GATGTTAATG GTCTTCGCAT CGCGGTTGTC
GGTTTAACGA CAGAAGATAC TGCTCAAATC GCTAACCCTG AGTTTATTGG TGGTCTTGAG
TTTACCGATC CAAAAGAAGA ACTTAAGAAA GTTATCCAGG ACATTAAAGA CGCCGACGCG
GCTGACTTGG TCTTCGCTAC TACTCATATG GGTCACTACG CCGATGGTAA CAACGGTAAC
AACGCCCCTG GTGATGTTGC TCTGGCTCGT GCAATGGCTG AAGGTGAGCT AGCTGCTGTT
ATCGGTGGTC ACTCTCAGAA CCCAGTTTGT ATGGAAGGTG ATGCGTATGA TCCTGAGTTC
ACCGCTGGTG GCGAATGTAA GCCAGACGTT CAGAACGGTA CTTTCATCAT GCAGGCTCAC
GAGTGGGGTA AGTATGTTGG ACAAGCTAAC TTTGAATACT TCAATGATAA GCTACACTTA
GCCAGCTACA AGTTAATTCC TGTTAACTTG AAGGAGAAGA ACGAAGAGGG CGAACGTGTC
CTTATCGGTG AAGCAATCAC GCCAGATGCT ACTGTACTTG AAATTATGCA GCAGTATCAG
GATAAAGGTC AGGAAGAGCT TCTTGAAGTT ATCGGTTCTA CCGATGGCAA GCTTGAGGGT
GACCGTGGCG TTGTTCGTAC ACAACAGACT AACCTGGGCC AACTGATTGC CCAAGCGCAG
CGTACTAAAG TTGATGCCGA TTTTGCGGTA ATGAACTCTG GTGGTGTCCG TGATTCTATC
GAAGCCGGTG AAATAACATA CAAAGATGTA CTGACAGTGC AGCCATTTGG CAACTCAATC
ACCTTGAGCA CACTGACAGG TGCTGAGATC ACTGAGTACC TGAATGTCGT TGCTACTGTA
GATATCGGTG AAACTGGTGC TGGTGCATAC CCTCAACTTG CGGGTATTAA GATGGATGTT
GATTGTGAAG CTAAGACCGT CGCTATTAAC GACATCAATG GCAAAGGTTA TGACGCTGCT
TCAACTTATA CCTTCACTGT ACCTAGCTAC AATGCCGCAG GTGGTGATGG CTACCCGGTA
CTGACTCCTG TTATGACTGG TTATGTTGAT GCTGAAGTTA TGTACACCTT CATCAAAGAT
ACTGGTGATA TCAAGGTTGC TGATTTCGCT CCTGTAGCGA GTGACATTCA GTTCTTGAAC
AGTAACAGCA CTTTAGCTTG TCAGCGTTAA
 
Protein sequence
MTNKLIKGLV ATAVLVALTG CGSDNDDNEV VLPATCAEAG EACTIFTVLH TNDNHGRFFE 
NKYGEYGMAA RKTLIDQIRA EVESNGGESL LLSGGDVNTG VPESDLQDAR PDFVGMNLMG
YDAMAVGNHE FDNPLETVDM QRELANFPML AANIYDKVSG ARYFEPYKVF DVNGLRIAVV
GLTTEDTAQI ANPEFIGGLE FTDPKEELKK VIQDIKDADA ADLVFATTHM GHYADGNNGN
NAPGDVALAR AMAEGELAAV IGGHSQNPVC MEGDAYDPEF TAGGECKPDV QNGTFIMQAH
EWGKYVGQAN FEYFNDKLHL ASYKLIPVNL KEKNEEGERV LIGEAITPDA TVLEIMQQYQ
DKGQEELLEV IGSTDGKLEG DRGVVRTQQT NLGQLIAQAQ RTKVDADFAV MNSGGVRDSI
EAGEITYKDV LTVQPFGNSI TLSTLTGAEI TEYLNVVATV DIGETGAGAY PQLAGIKMDV
DCEAKTVAIN DINGKGYDAA STYTFTVPSY NAAGGDGYPV LTPVMTGYVD AEVMYTFIKD
TGDIKVADFA PVASDIQFLN SNSTLACQR