| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2666 |
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| Symbol | |
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| ID | 5612588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3223270 |
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| End bp | 3224991 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933585 |
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| Product | acetolactate synthase 3 catalytic subunit |
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| Protein accession | YP_001474401 |
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| Protein GI | 157375801 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000302703 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000148215 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGAAAAGC TATCAGGCGC CAGCATGATC GTCCGTTCTC TTATCGACGA AGGCGTAAAA
CATATATTCG GCTATCCAGG CGGATCTGTG TTAGATATCT ATGATGCTCT GCACGAAAAA
TCTAAAATCG AACACATTCT CGTCCGTCAT GAACAAGCAG CCGTACATAT GGCCGATGGC
TATGCTCGTG CAACGGGTGA AGTCGGCGTA GTACTCGTCA CATCGGGTCC CGGAGCGACG
AACACAATTA CAGGTATTGC CACTGCCTAT ATGGATTCTA TCCCTATGGT GGTGATATCC
GGACAGGTAC CGAGTAACTT AATTGGTAAT GACGCATTCC AGGAATGTGA CATGATAGGT
ATCTCAAGAC CCGTCGTTAA ACACAGTTTC CTGGTCACAG ACGCAAAAGA TATCCCCACG
ATAGTAAAGA AAGCGTTTTT TATCGCGGCC AGCGGCCGTC CCGGCCCCGT GGTTATCGAT
GTACCGAAAG ACTGCATGAA TCCAGCCATG TTGCATGAAT ATAAATATCC TGATGACATC
AGTATGCGCT CATACAACCC AACAACAACC GGGCATAAAG GGCAGATCCG TCGTGGCGTG
CAGGCGCTGT TAAAAGCAAA GAAGCCCGTT CTGTATGTCG GTGGTGGCGC GATTATCTCT
GAGTGTGATA AGCAGATCTT AGCCCTGTCT GAAAAGTTAA ATATTCCGGT TGTCAGCACA
TTGATGGGAT TGGGTGCCTT TCCCGGCACC CATAAAAATA GCTTAGGTAT GCTTGGCATG
CACGGCTGCT ACGAAGCCAA CATGGCGATG CACAATACCG ACCTTATCTT CGGCATAGGT
GTACGCTTTG ACGATCGCAC CACTAACAAT ATTGACAAGT ATTGCCCTAA CGCAACCATA
CTGCATATCG ATATCGACCC TTCCTCTATC TCGAAAACCA TTAGAGTCGA TATCCCCATC
GTTGGCTCTG CCGAAAAGAT CCTCGATGAG ATGTTAGCGC AATTGGACTC AAGCGGTGAA
ACGAATTCAG ATGAAGCTGC TATCGACTTT TGGTGGAGTG AGATCAGTCA GTGGCGCAGT
CGTAAGAGCC TGGATTACGA TAAAACCAGT GAAAAAATCA AACCACAACA AGTAATTGAA
ACGCTTCACA AACTAACCAA TGGTGATGCC TACGTTGCAT CCGATGTGGG CCAACATCAA
ATGTTTGCCG CGCTCTACTA TCCGTTCGAT AAGCCACGTC GTTGGATCAA TTCCGGTGGA
CTCGGCACCA TGGGCTTTGG CCTTCCCGCA GCGATGGGGG TCAAGATGGC AAAGCCCGAT
GAGACTGTTA TCTGTGTAAC CGGAGATGGT TCGATTCAGA TGAACATTCA AGAGCTTTCT
ACAGCGCTGC AATACGATAC TCCGGTCAAG ATCATCAACC TCAATAACCG TTTCTTAGGC
ATGGTTAAAC AGTGGCAGGA TATTATCTAC GCCGGGCGTC ACTCTCACTC CTATATGGAC
TCGGTACCGG ATTTTGCAAA AATTGCCGAA GCATATGGCC ATGTGGGGAT GACCATCAGC
GATCCTGCTG AACTTGAATC CGGCCTTGAA AAAGCCCTGG CCATGAAAGA TAAGCTGGTA
TTTGTCGATA TTAATGTCGA TGAAACTGAA CACGTTTACC CCATGCAGAT CCGCGGTGGA
GCGATGAGCG AAATGTGGCT GAGCAAAACG GAGAAAAGCT AA
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| Protein sequence | MEKLSGASMI VRSLIDEGVK HIFGYPGGSV LDIYDALHEK SKIEHILVRH EQAAVHMADG
YARATGEVGV VLVTSGPGAT NTITGIATAY MDSIPMVVIS GQVPSNLIGN DAFQECDMIG
ISRPVVKHSF LVTDAKDIPT IVKKAFFIAA SGRPGPVVID VPKDCMNPAM LHEYKYPDDI
SMRSYNPTTT GHKGQIRRGV QALLKAKKPV LYVGGGAIIS ECDKQILALS EKLNIPVVST
LMGLGAFPGT HKNSLGMLGM HGCYEANMAM HNTDLIFGIG VRFDDRTTNN IDKYCPNATI
LHIDIDPSSI SKTIRVDIPI VGSAEKILDE MLAQLDSSGE TNSDEAAIDF WWSEISQWRS
RKSLDYDKTS EKIKPQQVIE TLHKLTNGDA YVASDVGQHQ MFAALYYPFD KPRRWINSGG
LGTMGFGLPA AMGVKMAKPD ETVICVTGDG SIQMNIQELS TALQYDTPVK IINLNNRFLG
MVKQWQDIIY AGRHSHSYMD SVPDFAKIAE AYGHVGMTIS DPAELESGLE KALAMKDKLV
FVDINVDETE HVYPMQIRGG AMSEMWLSKT EKS
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