| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2658 |
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| Symbol | |
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| ID | 5612625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3214488 |
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| End bp | 3215993 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933577 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474393 |
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| Protein GI | 157375793 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1030] Membrane-bound serine protease (ClpP class) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.853599 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0770417 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTATCGA AGAGTTATCT TATGTATGCA TCTATCTCTA AGTTATCGGC TTTGAGGCTA
ATTCCCCTTA AACTGATAAC AGCTTTACTT CCCCTTTTTT TCCTGGCTCT TGCACAGGCT
CAGGTAAGCT CGGTCCTGTT AACGTCTGTG TCTGACACTA CGCAAGAGGT GCCGGTCTTA
AGCATTAAAG GGGCAATAGG CCCCGCCGTA AGTGATTATC TGATAACCGG GATAAAGGCT
GCAAATCACA ACGCCTCTCC TCTGGTCATT ATTGTCATAG ACACTCCAGG CGGCTTAGTC
TCCAGCTTAC GCGACATAAA CCAAGTCATA CTTAATTCTG ATGTCCCCAT TGCCTGTCTG
GTGCATCCAC CGGGTGCACG TGCAGCCAGC GCAGGGACCT ATATACTCTA TGCATGTCAC
ATTGCGGCCA TGTCATCGGC AACAACATTG GGCGCCGCAA CACCGGTCAG TATAGGCGGC
CCCGCCGCAC CGACCTCCCC CACCGGCAAA GACGACAAAG ATCAGGACAA GGCACCAGCT
AAATCTGCGA TGGAGAAGAA AGTCCTCAAC GATTCTATCG CTTATATACG CTCCCTGGCC
CAGTTACGTG GACGCAACGA AGAGTGGGCA GAGTTAGCCG TTAAGGAAGC CGCGACATTA
ACGGCTAAAG AGGCACTCGA ACAAAATGTG ATCACGCTTC TTGCTGACTC CCCTCAGGAT
CTGTTGAACA CCCTGGATGG ATGGGAGGTA AAAGTAAAAG ATCAGCCGCG TACCCTGTCA
CTAAAGCAGG CGAGTCTGAA ACCCGTTATT CCTGACTGGC GCAACGAATT TATATCCACC
ATTACCAACC CTAATATTGC CTATATCCTG ATGCTCCTGG GCATCTACGG CATATTACTC
GAGTTTTATA GTCCGGGGAT TGGCGTCGCC GGGATCACTG GTGCCATCTG TCTGGTCATC
GCCCTTTATG CATTTCAACT CTTACCGATC AACTATGCGG GTCTGGCTTT GCTGCTTTTG
GGAATCGGTT TGCTTATCAC CGAAGCCATG ATGCCGAGTT TCGGCATATT TGGTGTAGGC
GGGATCATTG CCTTCACCAC AGGCTCAATA TTTCTTATCG ATACCAAGCA GACTCAATTT
CAAATATCTA TTCCGGTTAT TGCCGCAGTC ACCACTTTCA GTGTCCTGTT TTTCCTCTTC
ATCTTAAGCT TTCTGTGGCG CTCACGGAAG AACAGCATTG TCAGCGGCCA GGAAGCCATT
ATTGGTGCCG AAGCGGTCGT GCTCGATGAC TTTGATAAGC TTGGATATGT ATTGCTTGGT
GGTGAACGCT GGGCAGCCAA GACCGATACC CCACTGTGCA AGGGGCAAGG GGTCACCGTG
GTTAGTATTA ATGAGTTAAC CCTTATTTTG AAAGCAACAA GCGACAATAC TCAGGACAAG
CTTGCATCAG GTGTTGAGAA TTGTTCTAAC AACAAGGAGC GTGACAATGG ATCCCATCCT
TCATAA
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| Protein sequence | MLSKSYLMYA SISKLSALRL IPLKLITALL PLFFLALAQA QVSSVLLTSV SDTTQEVPVL
SIKGAIGPAV SDYLITGIKA ANHNASPLVI IVIDTPGGLV SSLRDINQVI LNSDVPIACL
VHPPGARAAS AGTYILYACH IAAMSSATTL GAATPVSIGG PAAPTSPTGK DDKDQDKAPA
KSAMEKKVLN DSIAYIRSLA QLRGRNEEWA ELAVKEAATL TAKEALEQNV ITLLADSPQD
LLNTLDGWEV KVKDQPRTLS LKQASLKPVI PDWRNEFIST ITNPNIAYIL MLLGIYGILL
EFYSPGIGVA GITGAICLVI ALYAFQLLPI NYAGLALLLL GIGLLITEAM MPSFGIFGVG
GIIAFTTGSI FLIDTKQTQF QISIPVIAAV TTFSVLFFLF ILSFLWRSRK NSIVSGQEAI
IGAEAVVLDD FDKLGYVLLG GERWAAKTDT PLCKGQGVTV VSINELTLIL KATSDNTQDK
LASGVENCSN NKERDNGSHP S
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